miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 58506 0.72 0.950428
Target:  5'- uGC-UCGACGugCUCGUCcACgGGCAc -3'
miRNA:   3'- cCGaAGCUGCugGAGUAGuUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 32821 0.72 0.936654
Target:  5'- cGuCUUCGuCGGCCUCG-CGGCCGGCu -3'
miRNA:   3'- cC-GAAGCuGCUGGAGUaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 137457 0.72 0.948718
Target:  5'- cGGCggaauccgccgugUCGGCGGCCUCGUaGAgCAGCGc -3'
miRNA:   3'- -CCGa------------AGCUGCUGGAGUAgUUgGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 29212 0.72 0.946081
Target:  5'- cGGCggUCGGCGGCC--GUCGGCCGccgaGCAg -3'
miRNA:   3'- -CCGa-AGCUGCUGGagUAGUUGGU----UGU- -5'
10731 3' -49.9 NC_002794.1 + 65800 0.71 0.958405
Target:  5'- aGGCgUUGACGACgUCcguuUCGAUCAGCGc -3'
miRNA:   3'- -CCGaAGCUGCUGgAGu---AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 92343 0.71 0.971618
Target:  5'- cGGCU-CGGCGuCaaCGUCGACCGGCu -3'
miRNA:   3'- -CCGAaGCUGCuGgaGUAGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 117217 0.71 0.971618
Target:  5'- cGGCUcCGGCcGCgUCAgggCGACCGACGc -3'
miRNA:   3'- -CCGAaGCUGcUGgAGUa--GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 138709 0.71 0.971618
Target:  5'- gGGCggCGugGACUcgCGUCgAGCCGGCu -3'
miRNA:   3'- -CCGaaGCugCUGGa-GUAG-UUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 10151 0.71 0.971618
Target:  5'- gGGCUagaGAgaGACCUCAcCAACCGACc -3'
miRNA:   3'- -CCGAag-CUg-CUGGAGUaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 81844 0.71 0.965454
Target:  5'- aGGuCUUCcuCGACCUCcgCAGCgGACAc -3'
miRNA:   3'- -CC-GAAGcuGCUGGAGuaGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 18704 0.71 0.971618
Target:  5'- cGGCggCGGCGGuCCggaCGUCGgaGCCGACGa -3'
miRNA:   3'- -CCGaaGCUGCU-GGa--GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 128117 0.71 0.958405
Target:  5'- gGGCU-CGGCGGauacCCUCAUCGugCGAgGa -3'
miRNA:   3'- -CCGAaGCUGCU----GGAGUAGUugGUUgU- -5'
10731 3' -49.9 NC_002794.1 + 138166 0.71 0.962043
Target:  5'- cGGCaUUUGACgcucuuGACCUCggCGGCCAGCc -3'
miRNA:   3'- -CCG-AAGCUG------CUGGAGuaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 48939 0.71 0.958405
Target:  5'- aGGCgcUCGGCGACCUCuucgcagaCGGCgAGCAg -3'
miRNA:   3'- -CCGa-AGCUGCUGGAGua------GUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 49016 0.7 0.98351
Target:  5'- cGCcgCGGCGGCCgcggCGUCGuCCGGCGc -3'
miRNA:   3'- cCGaaGCUGCUGGa---GUAGUuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 80208 0.7 0.976948
Target:  5'- gGGCggUCGACGacGCCUCGccgCAcACCGGCGc -3'
miRNA:   3'- -CCGa-AGCUGC--UGGAGUa--GU-UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 133863 0.7 0.976701
Target:  5'- uGGCccacaauUUCGACGuCCUCAUCAAa-GACGg -3'
miRNA:   3'- -CCG-------AAGCUGCuGGAGUAGUUggUUGU- -5'
10731 3' -49.9 NC_002794.1 + 115082 0.7 0.974384
Target:  5'- cGGCcUCGGCGGCCgcCcgCAGCCGcGCGu -3'
miRNA:   3'- -CCGaAGCUGCUGGa-GuaGUUGGU-UGU- -5'
10731 3' -49.9 NC_002794.1 + 71227 0.7 0.979319
Target:  5'- cGGCcgcguagUGGCGGCCggCGUgGACCGGCAc -3'
miRNA:   3'- -CCGaa-----GCUGCUGGa-GUAgUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 53874 0.7 0.981503
Target:  5'- cGGUcUCGGCGGacuCCUCGUCGGgacuCCGGCGg -3'
miRNA:   3'- -CCGaAGCUGCU---GGAGUAGUU----GGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.