Results 1 - 20 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 150913 | 1.11 | 0.011154 |
Target: 5'- gGGCUUCGACGACCUCAUCAACCAACAc -3' miRNA: 3'- -CCGAAGCUGCUGGAGUAGUUGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 56848 | 0.85 | 0.353516 |
Target: 5'- cGCUUCGACGACCUCAaCAagaugagcACCGGCAa -3' miRNA: 3'- cCGAAGCUGCUGGAGUaGU--------UGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 56363 | 0.76 | 0.790741 |
Target: 5'- aGGCggUCGACGugCUCGggaUCcACCGGCAc -3' miRNA: 3'- -CCGa-AGCUGCugGAGU---AGuUGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 175435 | 0.76 | 0.809009 |
Target: 5'- cGGCgcaGACGAUCgUCGUCGAUCAACGu -3' miRNA: 3'- -CCGaagCUGCUGG-AGUAGUUGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 98907 | 0.75 | 0.843474 |
Target: 5'- cGGUcUCGACGACUUCAUgAGCgGGCu -3' miRNA: 3'- -CCGaAGCUGCUGGAGUAgUUGgUUGu -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 65902 | 0.75 | 0.843474 |
Target: 5'- cGCgUCGACGACCUugacCGUCGucGCCGGCGg -3' miRNA: 3'- cCGaAGCUGCUGGA----GUAGU--UGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 76839 | 0.75 | 0.843474 |
Target: 5'- cGGCgaugcgCGcCGGCCUCGUCGGCCcAGCu -3' miRNA: 3'- -CCGaa----GCuGCUGGAGUAGUUGG-UUGu -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 98993 | 0.75 | 0.85161 |
Target: 5'- cGGUggUCGGCGGCUUCGUCAGCUucuuCAc -3' miRNA: 3'- -CCGa-AGCUGCUGGAGUAGUUGGuu--GU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 68919 | 0.75 | 0.854807 |
Target: 5'- gGGCUcgCGGCGuCCUCGUCGcccgcgggccgcggcGCCGGCGc -3' miRNA: 3'- -CCGAa-GCUGCuGGAGUAGU---------------UGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 129189 | 0.75 | 0.867255 |
Target: 5'- cGGCcuccgggUCGACGACCgag-CGGCCGACGg -3' miRNA: 3'- -CCGa------AGCUGCUGGaguaGUUGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 37910 | 0.74 | 0.874751 |
Target: 5'- cGGC-UCGcCGGCCUCAacgUCAACCGccGCGg -3' miRNA: 3'- -CCGaAGCuGCUGGAGU---AGUUGGU--UGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 18809 | 0.74 | 0.889061 |
Target: 5'- cGGCcaacgggUCGGCGACCUCG---GCCGGCGc -3' miRNA: 3'- -CCGa------AGCUGCUGGAGUaguUGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 57619 | 0.74 | 0.895864 |
Target: 5'- aGGCggcCGACGACCUgGcCGACCcGCAg -3' miRNA: 3'- -CCGaa-GCUGCUGGAgUaGUUGGuUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 75288 | 0.74 | 0.902429 |
Target: 5'- cGGCcggcCGGCG-CCUCGcCAGCCGACAu -3' miRNA: 3'- -CCGaa--GCUGCuGGAGUaGUUGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 114721 | 0.73 | 0.914827 |
Target: 5'- cGGCggCGGCGGCUccggguUCGUCgAGCCGGCGc -3' miRNA: 3'- -CCGaaGCUGCUGG------AGUAG-UUGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 8119 | 0.73 | 0.920657 |
Target: 5'- aGCgggCGGCGGCCUCcUCGgugACCGGCGa -3' miRNA: 3'- cCGaa-GCUGCUGGAGuAGU---UGGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 32821 | 0.72 | 0.936654 |
Target: 5'- cGuCUUCGuCGGCCUCG-CGGCCGGCu -3' miRNA: 3'- cC-GAAGCuGCUGGAGUaGUUGGUUGu -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 29212 | 0.72 | 0.946081 |
Target: 5'- cGGCggUCGGCGGCC--GUCGGCCGccgaGCAg -3' miRNA: 3'- -CCGa-AGCUGCUGGagUAGUUGGU----UGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 137457 | 0.72 | 0.948718 |
Target: 5'- cGGCggaauccgccgugUCGGCGGCCUCGUaGAgCAGCGc -3' miRNA: 3'- -CCGa------------AGCUGCUGGAGUAgUUgGUUGU- -5' |
|||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 75316 | 0.72 | 0.950004 |
Target: 5'- uGGCgacaccuagCGACGACCUCuUCccccgaaGACCGGCGa -3' miRNA: 3'- -CCGaa-------GCUGCUGGAGuAG-------UUGGUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home