miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 38171 0.7 0.977919
Target:  5'- cGGCUgcgcUCGGCGACgaaggcguuccugguCUCGUCGuucgcgcgcgcgACCGACAg -3'
miRNA:   3'- -CCGA----AGCUGCUG---------------GAGUAGU------------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 71227 0.7 0.979319
Target:  5'- cGGCcgcguagUGGCGGCCggCGUgGACCGGCAc -3'
miRNA:   3'- -CCGaa-----GCUGCUGGa-GUAgUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 34671 0.7 0.979546
Target:  5'- cGGC-UCGACcaguacgucaccuuCCUCGUCAcccGCCAGCAg -3'
miRNA:   3'- -CCGaAGCUGcu------------GGAGUAGU---UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 194005 0.7 0.981503
Target:  5'- cGGCUUCGccuucGCGGCCgCcgCcGCCGGCGc -3'
miRNA:   3'- -CCGAAGC-----UGCUGGaGuaGuUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 53874 0.7 0.981503
Target:  5'- cGGUcUCGGCGGacuCCUCGUCGGgacuCCGGCGg -3'
miRNA:   3'- -CCGaAGCUGCU---GGAGUAGUU----GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 81430 0.7 0.981503
Target:  5'- cGGCUUCGA-GACCgcgCcUguGCCGACGu -3'
miRNA:   3'- -CCGAAGCUgCUGGa--GuAguUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 76798 0.7 0.981503
Target:  5'- gGGCgagCGGCGACCaccggaccggaCGUCAcGCCAGCGg -3'
miRNA:   3'- -CCGaa-GCUGCUGGa----------GUAGU-UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 49016 0.7 0.98351
Target:  5'- cGCcgCGGCGGCCgcggCGUCGuCCGGCGc -3'
miRNA:   3'- cCGaaGCUGCUGGa---GUAGUuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 114100 0.7 0.98351
Target:  5'- ---gUCGACGAgCUCGUuCAgcGCCGACAg -3'
miRNA:   3'- ccgaAGCUGCUgGAGUA-GU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 128164 0.7 0.984265
Target:  5'- cGGCUcgcgccgcggacgggUCGGUGACCUCGUCGGuCgCGACGa -3'
miRNA:   3'- -CCGA---------------AGCUGCUGGAGUAGUU-G-GUUGU- -5'
10731 3' -49.9 NC_002794.1 + 26102 0.69 0.984814
Target:  5'- cGGCccCGGCGaucgccgugggccuGCCUCGaCGACCGACGa -3'
miRNA:   3'- -CCGaaGCUGC--------------UGGAGUaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 98681 0.69 0.985348
Target:  5'- cGGCa--GAuCGACCUCGacUCGAUCGACGu -3'
miRNA:   3'- -CCGaagCU-GCUGGAGU--AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 18962 0.69 0.985348
Target:  5'- -cCUUC-ACcACCUCAUCGACCGGCu -3'
miRNA:   3'- ccGAAGcUGcUGGAGUAGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 91880 0.69 0.985348
Target:  5'- uGGCggCGGCGGCCg---CGACgAGCAg -3'
miRNA:   3'- -CCGaaGCUGCUGGaguaGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 32261 0.69 0.985348
Target:  5'- uGGCgcUCGACGGCCggccgAUCGGCgAGCGa -3'
miRNA:   3'- -CCGa-AGCUGCUGGag---UAGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 113726 0.69 0.987025
Target:  5'- cGGCgUCGGCGACUgCAcCGACCGGa- -3'
miRNA:   3'- -CCGaAGCUGCUGGaGUaGUUGGUUgu -5'
10731 3' -49.9 NC_002794.1 + 21974 0.69 0.987025
Target:  5'- cGGCgccgUCGucuccGCGACC-CGUC-GCCGGCAa -3'
miRNA:   3'- -CCGa---AGC-----UGCUGGaGUAGuUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 44709 0.69 0.987025
Target:  5'- cGGCcgCGaccGCGGCgaCGUCGGCCGGCGc -3'
miRNA:   3'- -CCGaaGC---UGCUGgaGUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 144969 0.69 0.988551
Target:  5'- cGGCgccUCGACGGugUCG-CGACCGGCGc -3'
miRNA:   3'- -CCGa--AGCUGCUggAGUaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 191467 0.69 0.988551
Target:  5'- cGCUUCG-CGACC-CAgcggCAGCCAcggGCGa -3'
miRNA:   3'- cCGAAGCuGCUGGaGUa---GUUGGU---UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.