miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 75479 0.67 0.996335
Target:  5'- cGGCgccgaGACGGCCcgCGUacgAGCCGGCAa -3'
miRNA:   3'- -CCGaag--CUGCUGGa-GUAg--UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 89883 0.67 0.996276
Target:  5'- uGGCgaaccgUCGACGACgucgccuUUCAUCGGCCcguuGGCGc -3'
miRNA:   3'- -CCGa-----AGCUGCUG-------GAGUAGUUGG----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 17249 0.68 0.995971
Target:  5'- -cCUUCGACGGCggcgacccggCUCGUCAcccgggcacgccgccGCCGACGg -3'
miRNA:   3'- ccGAAGCUGCUG----------GAGUAGU---------------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 55298 0.68 0.995712
Target:  5'- gGGCggCGGCGGCgUCG-CGGCgGGCGc -3'
miRNA:   3'- -CCGaaGCUGCUGgAGUaGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 99739 0.68 0.995712
Target:  5'- uGCUgUCGAagGACCUgGUCuGGCCGACGu -3'
miRNA:   3'- cCGA-AGCUg-CUGGAgUAG-UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 64409 0.68 0.995712
Target:  5'- gGGCcaccgUCGucauccccaACGGCUUCAgcgcCAACCAGCAa -3'
miRNA:   3'- -CCGa----AGC---------UGCUGGAGUa---GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 159951 0.68 0.995712
Target:  5'- cGGUuUUCGACGAag--GUCGACCGACGu -3'
miRNA:   3'- -CCG-AAGCUGCUggagUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 188045 0.68 0.995006
Target:  5'- cGGacgCGGCGAgUCUCGacuUCGGCCAGCGu -3'
miRNA:   3'- -CCgaaGCUGCU-GGAGU---AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 12927 0.68 0.994776
Target:  5'- uGGCcgUCGACGACCUggcggacuucguggCGUUGGCCGu-- -3'
miRNA:   3'- -CCGa-AGCUGCUGGA--------------GUAGUUGGUugu -5'
10731 3' -49.9 NC_002794.1 + 120054 0.68 0.994208
Target:  5'- cGGCggUGGCGGCCgcggaGGCCGACGc -3'
miRNA:   3'- -CCGaaGCUGCUGGaguagUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 180842 0.68 0.994208
Target:  5'- cGGCgucaccgUCGucuACGGCCUCGUCGGaggCGGCGg -3'
miRNA:   3'- -CCGa------AGC---UGCUGGAGUAGUUg--GUUGU- -5'
10731 3' -49.9 NC_002794.1 + 13821 0.68 0.994208
Target:  5'- cGGCggCGACGGCCUCcUCcuCCu--- -3'
miRNA:   3'- -CCGaaGCUGCUGGAGuAGuuGGuugu -5'
10731 3' -49.9 NC_002794.1 + 104806 0.68 0.994208
Target:  5'- uGCUucgCGAUGGCCagGUCggUCAGCGg -3'
miRNA:   3'- cCGAa--GCUGCUGGagUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 96237 0.68 0.99331
Target:  5'- cGCUUCGucaACGGCCcgGUCuuCCAGCAc -3'
miRNA:   3'- cCGAAGC---UGCUGGagUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 67394 0.68 0.99331
Target:  5'- cGGCgccagcgUCGGCG-CCagCGUCGgcGCCAGCGu -3'
miRNA:   3'- -CCGa------AGCUGCuGGa-GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 188311 0.68 0.99331
Target:  5'- cGGCccgucgUCGuCGuCCUCGUCGccgccGCCGGCGg -3'
miRNA:   3'- -CCGa-----AGCuGCuGGAGUAGU-----UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 5676 0.68 0.992304
Target:  5'- cGGC--CGAUGACCUgAUCAACaugGACGc -3'
miRNA:   3'- -CCGaaGCUGCUGGAgUAGUUGg--UUGU- -5'
10731 3' -49.9 NC_002794.1 + 191682 0.68 0.992304
Target:  5'- cGGCggCGGCGugcCCUCGUCGcggACCAc-- -3'
miRNA:   3'- -CCGaaGCUGCu--GGAGUAGU---UGGUugu -5'
10731 3' -49.9 NC_002794.1 + 14929 0.68 0.992304
Target:  5'- cGGUccCGACGugCUC-UCGAUCGGCu -3'
miRNA:   3'- -CCGaaGCUGCugGAGuAGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 82051 0.69 0.991181
Target:  5'- cGGCggCGGCGGCgUCGUCcucggccucGCCGGCc -3'
miRNA:   3'- -CCGaaGCUGCUGgAGUAGu--------UGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.