miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 53874 0.7 0.981503
Target:  5'- cGGUcUCGGCGGacuCCUCGUCGGgacuCCGGCGg -3'
miRNA:   3'- -CCGaAGCUGCU---GGAGUAGUU----GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 76798 0.7 0.981503
Target:  5'- gGGCgagCGGCGACCaccggaccggaCGUCAcGCCAGCGg -3'
miRNA:   3'- -CCGaa-GCUGCUGGa----------GUAGU-UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 34671 0.7 0.979546
Target:  5'- cGGC-UCGACcaguacgucaccuuCCUCGUCAcccGCCAGCAg -3'
miRNA:   3'- -CCGaAGCUGcu------------GGAGUAGU---UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 71227 0.7 0.979319
Target:  5'- cGGCcgcguagUGGCGGCCggCGUgGACCGGCAc -3'
miRNA:   3'- -CCGaa-----GCUGCUGGa-GUAgUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 38171 0.7 0.977919
Target:  5'- cGGCUgcgcUCGGCGACgaaggcguuccugguCUCGUCGuucgcgcgcgcgACCGACAg -3'
miRNA:   3'- -CCGA----AGCUGCUG---------------GAGUAGU------------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 180751 0.7 0.976948
Target:  5'- cGGCUccUCGGCGGCUUCGgcggCAACUguccgGGCGg -3'
miRNA:   3'- -CCGA--AGCUGCUGGAGUa---GUUGG-----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 117085 0.7 0.976948
Target:  5'- cGGCagCGGCGugUcCAcuUCGGCCGACAu -3'
miRNA:   3'- -CCGaaGCUGCugGaGU--AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 80208 0.7 0.976948
Target:  5'- gGGCggUCGACGacGCCUCGccgCAcACCGGCGc -3'
miRNA:   3'- -CCGa-AGCUGC--UGGAGUa--GU-UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 133863 0.7 0.976701
Target:  5'- uGGCccacaauUUCGACGuCCUCAUCAAa-GACGg -3'
miRNA:   3'- -CCG-------AAGCUGCuGGAGUAGUUggUUGU- -5'
10731 3' -49.9 NC_002794.1 + 74411 0.7 0.974384
Target:  5'- cGCcUCGACGAgCUCuUCGGCCuGACGa -3'
miRNA:   3'- cCGaAGCUGCUgGAGuAGUUGG-UUGU- -5'
10731 3' -49.9 NC_002794.1 + 115082 0.7 0.974384
Target:  5'- cGGCcUCGGCGGCCgcCcgCAGCCGcGCGu -3'
miRNA:   3'- -CCGaAGCUGCUGGa-GuaGUUGGU-UGU- -5'
10731 3' -49.9 NC_002794.1 + 18704 0.71 0.971618
Target:  5'- cGGCggCGGCGGuCCggaCGUCGgaGCCGACGa -3'
miRNA:   3'- -CCGaaGCUGCU-GGa--GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 117217 0.71 0.971618
Target:  5'- cGGCUcCGGCcGCgUCAgggCGACCGACGc -3'
miRNA:   3'- -CCGAaGCUGcUGgAGUa--GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 10151 0.71 0.971618
Target:  5'- gGGCUagaGAgaGACCUCAcCAACCGACc -3'
miRNA:   3'- -CCGAag-CUg-CUGGAGUaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 138709 0.71 0.971618
Target:  5'- gGGCggCGugGACUcgCGUCgAGCCGGCu -3'
miRNA:   3'- -CCGaaGCugCUGGa-GUAG-UUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 92343 0.71 0.971618
Target:  5'- cGGCU-CGGCGuCaaCGUCGACCGGCu -3'
miRNA:   3'- -CCGAaGCUGCuGgaGUAGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 81844 0.71 0.965454
Target:  5'- aGGuCUUCcuCGACCUCcgCAGCgGACAc -3'
miRNA:   3'- -CC-GAAGcuGCUGGAGuaGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 138166 0.71 0.962043
Target:  5'- cGGCaUUUGACgcucuuGACCUCggCGGCCAGCc -3'
miRNA:   3'- -CCG-AAGCUG------CUGGAGuaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 48939 0.71 0.958405
Target:  5'- aGGCgcUCGGCGACCUCuucgcagaCGGCgAGCAg -3'
miRNA:   3'- -CCGa-AGCUGCUGGAGua------GUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 65800 0.71 0.958405
Target:  5'- aGGCgUUGACGACgUCcguuUCGAUCAGCGc -3'
miRNA:   3'- -CCGaAGCUGCUGgAGu---AGUUGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.