miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 58506 0.72 0.950428
Target:  5'- uGC-UCGACGugCUCGUCcACgGGCAc -3'
miRNA:   3'- cCGaAGCUGCugGAGUAGuUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 64409 0.68 0.995712
Target:  5'- gGGCcaccgUCGucauccccaACGGCUUCAgcgcCAACCAGCAa -3'
miRNA:   3'- -CCGa----AGC---------UGCUGGAGUa---GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 65249 0.69 0.991181
Target:  5'- cGGCggCGAucCGGCCUCGcCGAgCGGCGg -3'
miRNA:   3'- -CCGaaGCU--GCUGGAGUaGUUgGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 65800 0.71 0.958405
Target:  5'- aGGCgUUGACGACgUCcguuUCGAUCAGCGc -3'
miRNA:   3'- -CCGaAGCUGCUGgAGu---AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 65902 0.75 0.843474
Target:  5'- cGCgUCGACGACCUugacCGUCGucGCCGGCGg -3'
miRNA:   3'- cCGaAGCUGCUGGA----GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 66248 0.66 0.999123
Target:  5'- cGCUUgCGGCGACC-CGUcCGGCCccguaGACGa -3'
miRNA:   3'- cCGAA-GCUGCUGGaGUA-GUUGG-----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 66748 0.66 0.999283
Target:  5'- cGGCggcgCGuACGACCgc-UgGACCAGCGa -3'
miRNA:   3'- -CCGaa--GC-UGCUGGaguAgUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 67394 0.68 0.99331
Target:  5'- cGGCgccagcgUCGGCG-CCagCGUCGgcGCCAGCGu -3'
miRNA:   3'- -CCGa------AGCUGCuGGa-GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 68295 0.66 0.998706
Target:  5'- gGGCguaCGAacGCCUCGUggCGGCCGACGc -3'
miRNA:   3'- -CCGaa-GCUgcUGGAGUA--GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 68919 0.75 0.854807
Target:  5'- gGGCUcgCGGCGuCCUCGUCGcccgcgggccgcggcGCCGGCGc -3'
miRNA:   3'- -CCGAa-GCUGCuGGAGUAGU---------------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 71227 0.7 0.979319
Target:  5'- cGGCcgcguagUGGCGGCCggCGUgGACCGGCAc -3'
miRNA:   3'- -CCGaa-----GCUGCUGGa-GUAgUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 73991 0.66 0.999123
Target:  5'- cGCUaCGACGACCUgGUCc-CCAcgcuGCGc -3'
miRNA:   3'- cCGAaGCUGCUGGAgUAGuuGGU----UGU- -5'
10731 3' -49.9 NC_002794.1 + 74411 0.7 0.974384
Target:  5'- cGCcUCGACGAgCUCuUCGGCCuGACGa -3'
miRNA:   3'- cCGaAGCUGCUgGAGuAGUUGG-UUGU- -5'
10731 3' -49.9 NC_002794.1 + 75288 0.74 0.902429
Target:  5'- cGGCcggcCGGCG-CCUCGcCAGCCGACAu -3'
miRNA:   3'- -CCGaa--GCUGCuGGAGUaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 75316 0.72 0.950004
Target:  5'- uGGCgacaccuagCGACGACCUCuUCccccgaaGACCGGCGa -3'
miRNA:   3'- -CCGaa-------GCUGCUGGAGuAG-------UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 75383 0.67 0.997532
Target:  5'- cGGCggCGGCGGCCUCuccccgucccuccucGUCcGCCGu-- -3'
miRNA:   3'- -CCGaaGCUGCUGGAG---------------UAGuUGGUugu -5'
10731 3' -49.9 NC_002794.1 + 75479 0.67 0.996335
Target:  5'- cGGCgccgaGACGGCCcgCGUacgAGCCGGCAa -3'
miRNA:   3'- -CCGaag--CUGCUGGa-GUAg--UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 76798 0.7 0.981503
Target:  5'- gGGCgagCGGCGACCaccggaccggaCGUCAcGCCAGCGg -3'
miRNA:   3'- -CCGaa-GCUGCUGGa----------GUAGU-UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 76839 0.75 0.843474
Target:  5'- cGGCgaugcgCGcCGGCCUCGUCGGCCcAGCu -3'
miRNA:   3'- -CCGaa----GCuGCUGGAGUAGUUGG-UUGu -5'
10731 3' -49.9 NC_002794.1 + 77404 0.67 0.997359
Target:  5'- uGGCcgUCGGCGAgauCCUgCAccaGACCGACAc -3'
miRNA:   3'- -CCGa-AGCUGCU---GGA-GUag-UUGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.