miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 78337 0.66 0.998932
Target:  5'- gGGCggaGGCG-CCggaaUGUCGGCCAGCAg -3'
miRNA:   3'- -CCGaagCUGCuGGa---GUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 79430 0.66 0.999123
Target:  5'- gGGCccggCGGCGGCggCggCGACCGGCGc -3'
miRNA:   3'- -CCGaa--GCUGCUGgaGuaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 80082 0.67 0.997359
Target:  5'- aGCUcgCGACGACCcUCAUCu-CCAu-- -3'
miRNA:   3'- cCGAa-GCUGCUGG-AGUAGuuGGUugu -5'
10731 3' -49.9 NC_002794.1 + 80208 0.7 0.976948
Target:  5'- gGGCggUCGACGacGCCUCGccgCAcACCGGCGc -3'
miRNA:   3'- -CCGa-AGCUGC--UGGAGUa--GU-UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 81266 0.66 0.998324
Target:  5'- uGGcCUUCGcccgccagcaacuCGACCUCcgCAACCugcuGCAc -3'
miRNA:   3'- -CC-GAAGCu------------GCUGGAGuaGUUGGu---UGU- -5'
10731 3' -49.9 NC_002794.1 + 81430 0.7 0.981503
Target:  5'- cGGCUUCGA-GACCgcgCcUguGCCGACGu -3'
miRNA:   3'- -CCGAAGCUgCUGGa--GuAguUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 81463 0.66 0.999123
Target:  5'- aGCUcuuauaUCGACGuCCgc-UCGGCCAGCGu -3'
miRNA:   3'- cCGA------AGCUGCuGGaguAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 81844 0.71 0.965454
Target:  5'- aGGuCUUCcuCGACCUCcgCAGCgGACAc -3'
miRNA:   3'- -CC-GAAGcuGCUGGAGuaGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 82051 0.69 0.991181
Target:  5'- cGGCggCGGCGGCgUCGUCcucggccucGCCGGCc -3'
miRNA:   3'- -CCGaaGCUGCUGgAGUAGu--------UGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 83697 0.66 0.999283
Target:  5'- uGCgaCGACGGCCUCugcCAGauCCGACu -3'
miRNA:   3'- cCGaaGCUGCUGGAGua-GUU--GGUUGu -5'
10731 3' -49.9 NC_002794.1 + 86033 0.66 0.998932
Target:  5'- cGGCg--GACaGGCCUCAUCgGGCCGGg- -3'
miRNA:   3'- -CCGaagCUG-CUGGAGUAG-UUGGUUgu -5'
10731 3' -49.9 NC_002794.1 + 89883 0.67 0.996276
Target:  5'- uGGCgaaccgUCGACGACgucgccuUUCAUCGGCCcguuGGCGc -3'
miRNA:   3'- -CCGa-----AGCUGCUG-------GAGUAGUUGG----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 90973 0.72 0.954535
Target:  5'- cGCUUCGGCGugGCCUCGUaccgGGCCGAg- -3'
miRNA:   3'- cCGAAGCUGC--UGGAGUAg---UUGGUUgu -5'
10731 3' -49.9 NC_002794.1 + 91880 0.69 0.985348
Target:  5'- uGGCggCGGCGGCCg---CGACgAGCAg -3'
miRNA:   3'- -CCGaaGCUGCUGGaguaGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 92343 0.71 0.971618
Target:  5'- cGGCU-CGGCGuCaaCGUCGACCGGCu -3'
miRNA:   3'- -CCGAaGCUGCuGgaGUAGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 93310 0.67 0.998262
Target:  5'- cGGCUUCGGCGACUaccugagcacgcugCA-CGGCCugAGCAc -3'
miRNA:   3'- -CCGAAGCUGCUGGa-------------GUaGUUGG--UUGU- -5'
10731 3' -49.9 NC_002794.1 + 95839 0.66 0.999123
Target:  5'- cGGCggCGGCGGCCggggaggCGGCgGGCGg -3'
miRNA:   3'- -CCGaaGCUGCUGGagua---GUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 96237 0.68 0.99331
Target:  5'- cGCUUCGucaACGGCCcgGUCuuCCAGCAc -3'
miRNA:   3'- cCGAAGC---UGCUGGagUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 98681 0.69 0.985348
Target:  5'- cGGCa--GAuCGACCUCGacUCGAUCGACGu -3'
miRNA:   3'- -CCGaagCU-GCUGGAGU--AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 98907 0.75 0.843474
Target:  5'- cGGUcUCGACGACUUCAUgAGCgGGCu -3'
miRNA:   3'- -CCGaAGCUGCUGGAGUAgUUGgUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.