miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 98993 0.75 0.85161
Target:  5'- cGGUggUCGGCGGCUUCGUCAGCUucuuCAc -3'
miRNA:   3'- -CCGa-AGCUGCUGGAGUAGUUGGuu--GU- -5'
10731 3' -49.9 NC_002794.1 + 99739 0.68 0.995712
Target:  5'- uGCUgUCGAagGACCUgGUCuGGCCGACGu -3'
miRNA:   3'- cCGA-AGCUg-CUGGAgUAG-UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 104806 0.68 0.994208
Target:  5'- uGCUucgCGAUGGCCagGUCggUCAGCGg -3'
miRNA:   3'- cCGAa--GCUGCUGGagUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 106447 0.66 0.998442
Target:  5'- aGGCggugcaGGCgGACCUCGUC-GCCGugAc -3'
miRNA:   3'- -CCGaag---CUG-CUGGAGUAGuUGGUugU- -5'
10731 3' -49.9 NC_002794.1 + 113726 0.69 0.987025
Target:  5'- cGGCgUCGGCGACUgCAcCGACCGGa- -3'
miRNA:   3'- -CCGaAGCUGCUGGaGUaGUUGGUUgu -5'
10731 3' -49.9 NC_002794.1 + 114100 0.7 0.98351
Target:  5'- ---gUCGACGAgCUCGUuCAgcGCCGACAg -3'
miRNA:   3'- ccgaAGCUGCUgGAGUA-GU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 114721 0.73 0.914827
Target:  5'- cGGCggCGGCGGCUccggguUCGUCgAGCCGGCGc -3'
miRNA:   3'- -CCGaaGCUGCUGG------AGUAG-UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 115082 0.7 0.974384
Target:  5'- cGGCcUCGGCGGCCgcCcgCAGCCGcGCGu -3'
miRNA:   3'- -CCGaAGCUGCUGGa-GuaGUUGGU-UGU- -5'
10731 3' -49.9 NC_002794.1 + 116941 0.66 0.998706
Target:  5'- cGGCgucccCGGCGGCggCGUCGGCgGGCGc -3'
miRNA:   3'- -CCGaa---GCUGCUGgaGUAGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 117085 0.7 0.976948
Target:  5'- cGGCagCGGCGugUcCAcuUCGGCCGACAu -3'
miRNA:   3'- -CCGaaGCUGCugGaGU--AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 117217 0.71 0.971618
Target:  5'- cGGCUcCGGCcGCgUCAgggCGACCGACGc -3'
miRNA:   3'- -CCGAaGCUGcUGgAGUa--GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 119632 0.72 0.954535
Target:  5'- cGGCcgUCGucagcACGGCUUCGUCggUCAGCGu -3'
miRNA:   3'- -CCGa-AGC-----UGCUGGAGUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 120054 0.68 0.994208
Target:  5'- cGGCggUGGCGGCCgcggaGGCCGACGc -3'
miRNA:   3'- -CCGaaGCUGCUGGaguagUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 128000 0.72 0.950428
Target:  5'- gGGCg--GACGACCgUCGUCGGCCGc-- -3'
miRNA:   3'- -CCGaagCUGCUGG-AGUAGUUGGUugu -5'
10731 3' -49.9 NC_002794.1 + 128117 0.71 0.958405
Target:  5'- gGGCU-CGGCGGauacCCUCAUCGugCGAgGa -3'
miRNA:   3'- -CCGAaGCUGCU----GGAGUAGUugGUUgU- -5'
10731 3' -49.9 NC_002794.1 + 128164 0.7 0.984265
Target:  5'- cGGCUcgcgccgcggacgggUCGGUGACCUCGUCGGuCgCGACGa -3'
miRNA:   3'- -CCGA---------------AGCUGCUGGAGUAGUU-G-GUUGU- -5'
10731 3' -49.9 NC_002794.1 + 129189 0.75 0.867255
Target:  5'- cGGCcuccgggUCGACGACCgag-CGGCCGACGg -3'
miRNA:   3'- -CCGa------AGCUGCUGGaguaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 133491 0.67 0.997774
Target:  5'- uGGCUuucgCGGCGACC-CGUCcgaCGGCGa -3'
miRNA:   3'- -CCGAa---GCUGCUGGaGUAGuugGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 133863 0.7 0.976701
Target:  5'- uGGCccacaauUUCGACGuCCUCAUCAAa-GACGg -3'
miRNA:   3'- -CCG-------AAGCUGCuGGAGUAGUUggUUGU- -5'
10731 3' -49.9 NC_002794.1 + 137457 0.72 0.948718
Target:  5'- cGGCggaauccgccgugUCGGCGGCCUCGUaGAgCAGCGc -3'
miRNA:   3'- -CCGa------------AGCUGCUGGAGUAgUUgGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.