miRNA display CGI


Results 101 - 120 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 138166 0.71 0.962043
Target:  5'- cGGCaUUUGACgcucuuGACCUCggCGGCCAGCc -3'
miRNA:   3'- -CCG-AAGCUG------CUGGAGuaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 138709 0.71 0.971618
Target:  5'- gGGCggCGugGACUcgCGUCgAGCCGGCu -3'
miRNA:   3'- -CCGaaGCugCUGGa-GUAG-UUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 140321 0.67 0.996882
Target:  5'- cGGCUggagaaguccUUGGCGucucuGCCUUAUCGGCCcGACGu -3'
miRNA:   3'- -CCGA----------AGCUGC-----UGGAGUAGUUGG-UUGU- -5'
10731 3' -49.9 NC_002794.1 + 144969 0.69 0.988551
Target:  5'- cGGCgccUCGACGGugUCG-CGACCGGCGc -3'
miRNA:   3'- -CCGa--AGCUGCUggAGUaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 149920 0.66 0.999123
Target:  5'- gGGCU---ACGACCg---CGACCGGCAg -3'
miRNA:   3'- -CCGAagcUGCUGGaguaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 150845 0.66 0.999283
Target:  5'- aGCUccagCGGCGGCCgCGUCuacgccuauAGCCGGCGc -3'
miRNA:   3'- cCGAa---GCUGCUGGaGUAG---------UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 150913 1.11 0.011154
Target:  5'- gGGCUUCGACGACCUCAUCAACCAACAc -3'
miRNA:   3'- -CCGAAGCUGCUGGAGUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 152983 0.69 0.989933
Target:  5'- cGCUUCGcCGACaggCGUCGuaucuCCAGCAc -3'
miRNA:   3'- cCGAAGCuGCUGga-GUAGUu----GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 159951 0.68 0.995712
Target:  5'- cGGUuUUCGACGAag--GUCGACCGACGu -3'
miRNA:   3'- -CCG-AAGCUGCUggagUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 175435 0.76 0.809009
Target:  5'- cGGCgcaGACGAUCgUCGUCGAUCAACGu -3'
miRNA:   3'- -CCGaagCUGCUGG-AGUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 177623 0.66 0.999123
Target:  5'- cGCUccUCGACGACgaggcCGACCAGCGu -3'
miRNA:   3'- cCGA--AGCUGCUGgaguaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 180751 0.7 0.976948
Target:  5'- cGGCUccUCGGCGGCUUCGgcggCAACUguccgGGCGg -3'
miRNA:   3'- -CCGA--AGCUGCUGGAGUa---GUUGG-----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 180842 0.68 0.994208
Target:  5'- cGGCgucaccgUCGucuACGGCCUCGUCGGaggCGGCGg -3'
miRNA:   3'- -CCGa------AGC---UGCUGGAGUAGUUg--GUUGU- -5'
10731 3' -49.9 NC_002794.1 + 182965 0.67 0.997359
Target:  5'- cGGCggcCGGCu-CCUCGUUcgAGCCGACGg -3'
miRNA:   3'- -CCGaa-GCUGcuGGAGUAG--UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 185523 0.66 0.998706
Target:  5'- cGGCgucaUGACGcGCCUCAUCucGCCAc-- -3'
miRNA:   3'- -CCGaa--GCUGC-UGGAGUAGu-UGGUugu -5'
10731 3' -49.9 NC_002794.1 + 186304 0.66 0.999123
Target:  5'- cGGCcggUCGccGCGGCgcgCUCGUCcuCCAACAc -3'
miRNA:   3'- -CCGa--AGC--UGCUG---GAGUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 186345 0.67 0.997774
Target:  5'- cGGCggCGGCGACgUgccCGACCAGCc -3'
miRNA:   3'- -CCGaaGCUGCUGgAguaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 188045 0.68 0.995006
Target:  5'- cGGacgCGGCGAgUCUCGacuUCGGCCAGCGu -3'
miRNA:   3'- -CCgaaGCUGCU-GGAGU---AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 188311 0.68 0.99331
Target:  5'- cGGCccgucgUCGuCGuCCUCGUCGccgccGCCGGCGg -3'
miRNA:   3'- -CCGa-----AGCuGCuGGAGUAGU-----UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 191001 0.67 0.998133
Target:  5'- cGGCgucgCGAuCGGCCgu-UCGAUCGGCAc -3'
miRNA:   3'- -CCGaa--GCU-GCUGGaguAGUUGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.