Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 194938 | 0.69 | 0.991181 |
Target: 5'- aGCUccgaCGGCGACgUCGUCAGCagCGGCAc -3' miRNA: 3'- cCGAa---GCUGCUGgAGUAGUUG--GUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 194005 | 0.7 | 0.981503 |
Target: 5'- cGGCUUCGccuucGCGGCCgCcgCcGCCGGCGc -3' miRNA: 3'- -CCGAAGC-----UGCUGGaGuaGuUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 193747 | 0.66 | 0.999283 |
Target: 5'- cGGCUUCGGCGAgCga--CcGCCGGCc -3' miRNA: 3'- -CCGAAGCUGCUgGaguaGuUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 191682 | 0.68 | 0.992304 |
Target: 5'- cGGCggCGGCGugcCCUCGUCGcggACCAc-- -3' miRNA: 3'- -CCGaaGCUGCu--GGAGUAGU---UGGUugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 191467 | 0.69 | 0.988551 |
Target: 5'- cGCUUCG-CGACC-CAgcggCAGCCAcggGCGa -3' miRNA: 3'- cCGAAGCuGCUGGaGUa---GUUGGU---UGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 191001 | 0.67 | 0.998133 |
Target: 5'- cGGCgucgCGAuCGGCCgu-UCGAUCGGCAc -3' miRNA: 3'- -CCGaa--GCU-GCUGGaguAGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 188311 | 0.68 | 0.99331 |
Target: 5'- cGGCccgucgUCGuCGuCCUCGUCGccgccGCCGGCGg -3' miRNA: 3'- -CCGa-----AGCuGCuGGAGUAGU-----UGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 188045 | 0.68 | 0.995006 |
Target: 5'- cGGacgCGGCGAgUCUCGacuUCGGCCAGCGu -3' miRNA: 3'- -CCgaaGCUGCU-GGAGU---AGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 186345 | 0.67 | 0.997774 |
Target: 5'- cGGCggCGGCGACgUgccCGACCAGCc -3' miRNA: 3'- -CCGaaGCUGCUGgAguaGUUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 186304 | 0.66 | 0.999123 |
Target: 5'- cGGCcggUCGccGCGGCgcgCUCGUCcuCCAACAc -3' miRNA: 3'- -CCGa--AGC--UGCUG---GAGUAGuuGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 185523 | 0.66 | 0.998706 |
Target: 5'- cGGCgucaUGACGcGCCUCAUCucGCCAc-- -3' miRNA: 3'- -CCGaa--GCUGC-UGGAGUAGu-UGGUugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 182965 | 0.67 | 0.997359 |
Target: 5'- cGGCggcCGGCu-CCUCGUUcgAGCCGACGg -3' miRNA: 3'- -CCGaa-GCUGcuGGAGUAG--UUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 180842 | 0.68 | 0.994208 |
Target: 5'- cGGCgucaccgUCGucuACGGCCUCGUCGGaggCGGCGg -3' miRNA: 3'- -CCGa------AGC---UGCUGGAGUAGUUg--GUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 180751 | 0.7 | 0.976948 |
Target: 5'- cGGCUccUCGGCGGCUUCGgcggCAACUguccgGGCGg -3' miRNA: 3'- -CCGA--AGCUGCUGGAGUa---GUUGG-----UUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 177623 | 0.66 | 0.999123 |
Target: 5'- cGCUccUCGACGACgaggcCGACCAGCGu -3' miRNA: 3'- cCGA--AGCUGCUGgaguaGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 175435 | 0.76 | 0.809009 |
Target: 5'- cGGCgcaGACGAUCgUCGUCGAUCAACGu -3' miRNA: 3'- -CCGaagCUGCUGG-AGUAGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 159951 | 0.68 | 0.995712 |
Target: 5'- cGGUuUUCGACGAag--GUCGACCGACGu -3' miRNA: 3'- -CCG-AAGCUGCUggagUAGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 152983 | 0.69 | 0.989933 |
Target: 5'- cGCUUCGcCGACaggCGUCGuaucuCCAGCAc -3' miRNA: 3'- cCGAAGCuGCUGga-GUAGUu----GGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 150913 | 1.11 | 0.011154 |
Target: 5'- gGGCUUCGACGACCUCAUCAACCAACAc -3' miRNA: 3'- -CCGAAGCUGCUGGAGUAGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 150845 | 0.66 | 0.999283 |
Target: 5'- aGCUccagCGGCGGCCgCGUCuacgccuauAGCCGGCGc -3' miRNA: 3'- cCGAa---GCUGCUGGaGUAG---------UUGGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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