Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 149920 | 0.66 | 0.999123 |
Target: 5'- gGGCU---ACGACCg---CGACCGGCAg -3' miRNA: 3'- -CCGAagcUGCUGGaguaGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 144969 | 0.69 | 0.988551 |
Target: 5'- cGGCgccUCGACGGugUCG-CGACCGGCGc -3' miRNA: 3'- -CCGa--AGCUGCUggAGUaGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 140321 | 0.67 | 0.996882 |
Target: 5'- cGGCUggagaaguccUUGGCGucucuGCCUUAUCGGCCcGACGu -3' miRNA: 3'- -CCGA----------AGCUGC-----UGGAGUAGUUGG-UUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 138709 | 0.71 | 0.971618 |
Target: 5'- gGGCggCGugGACUcgCGUCgAGCCGGCu -3' miRNA: 3'- -CCGaaGCugCUGGa-GUAG-UUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 138166 | 0.71 | 0.962043 |
Target: 5'- cGGCaUUUGACgcucuuGACCUCggCGGCCAGCc -3' miRNA: 3'- -CCG-AAGCUG------CUGGAGuaGUUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 137457 | 0.72 | 0.948718 |
Target: 5'- cGGCggaauccgccgugUCGGCGGCCUCGUaGAgCAGCGc -3' miRNA: 3'- -CCGa------------AGCUGCUGGAGUAgUUgGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 133863 | 0.7 | 0.976701 |
Target: 5'- uGGCccacaauUUCGACGuCCUCAUCAAa-GACGg -3' miRNA: 3'- -CCG-------AAGCUGCuGGAGUAGUUggUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 133491 | 0.67 | 0.997774 |
Target: 5'- uGGCUuucgCGGCGACC-CGUCcgaCGGCGa -3' miRNA: 3'- -CCGAa---GCUGCUGGaGUAGuugGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 129189 | 0.75 | 0.867255 |
Target: 5'- cGGCcuccgggUCGACGACCgag-CGGCCGACGg -3' miRNA: 3'- -CCGa------AGCUGCUGGaguaGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 128164 | 0.7 | 0.984265 |
Target: 5'- cGGCUcgcgccgcggacgggUCGGUGACCUCGUCGGuCgCGACGa -3' miRNA: 3'- -CCGA---------------AGCUGCUGGAGUAGUU-G-GUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 128117 | 0.71 | 0.958405 |
Target: 5'- gGGCU-CGGCGGauacCCUCAUCGugCGAgGa -3' miRNA: 3'- -CCGAaGCUGCU----GGAGUAGUugGUUgU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 128000 | 0.72 | 0.950428 |
Target: 5'- gGGCg--GACGACCgUCGUCGGCCGc-- -3' miRNA: 3'- -CCGaagCUGCUGG-AGUAGUUGGUugu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 120054 | 0.68 | 0.994208 |
Target: 5'- cGGCggUGGCGGCCgcggaGGCCGACGc -3' miRNA: 3'- -CCGaaGCUGCUGGaguagUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 119632 | 0.72 | 0.954535 |
Target: 5'- cGGCcgUCGucagcACGGCUUCGUCggUCAGCGu -3' miRNA: 3'- -CCGa-AGC-----UGCUGGAGUAGuuGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 117217 | 0.71 | 0.971618 |
Target: 5'- cGGCUcCGGCcGCgUCAgggCGACCGACGc -3' miRNA: 3'- -CCGAaGCUGcUGgAGUa--GUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 117085 | 0.7 | 0.976948 |
Target: 5'- cGGCagCGGCGugUcCAcuUCGGCCGACAu -3' miRNA: 3'- -CCGaaGCUGCugGaGU--AGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 116941 | 0.66 | 0.998706 |
Target: 5'- cGGCgucccCGGCGGCggCGUCGGCgGGCGc -3' miRNA: 3'- -CCGaa---GCUGCUGgaGUAGUUGgUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 115082 | 0.7 | 0.974384 |
Target: 5'- cGGCcUCGGCGGCCgcCcgCAGCCGcGCGu -3' miRNA: 3'- -CCGaAGCUGCUGGa-GuaGUUGGU-UGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 114721 | 0.73 | 0.914827 |
Target: 5'- cGGCggCGGCGGCUccggguUCGUCgAGCCGGCGc -3' miRNA: 3'- -CCGaaGCUGCUGG------AGUAG-UUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 114100 | 0.7 | 0.98351 |
Target: 5'- ---gUCGACGAgCUCGUuCAgcGCCGACAg -3' miRNA: 3'- ccgaAGCUGCUgGAGUA-GU--UGGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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