Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10731 | 3' | -49.9 | NC_002794.1 | + | 113726 | 0.69 | 0.987025 |
Target: 5'- cGGCgUCGGCGACUgCAcCGACCGGa- -3' miRNA: 3'- -CCGaAGCUGCUGGaGUaGUUGGUUgu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 106447 | 0.66 | 0.998442 |
Target: 5'- aGGCggugcaGGCgGACCUCGUC-GCCGugAc -3' miRNA: 3'- -CCGaag---CUG-CUGGAGUAGuUGGUugU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 104806 | 0.68 | 0.994208 |
Target: 5'- uGCUucgCGAUGGCCagGUCggUCAGCGg -3' miRNA: 3'- cCGAa--GCUGCUGGagUAGuuGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 99739 | 0.68 | 0.995712 |
Target: 5'- uGCUgUCGAagGACCUgGUCuGGCCGACGu -3' miRNA: 3'- cCGA-AGCUg-CUGGAgUAG-UUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 98993 | 0.75 | 0.85161 |
Target: 5'- cGGUggUCGGCGGCUUCGUCAGCUucuuCAc -3' miRNA: 3'- -CCGa-AGCUGCUGGAGUAGUUGGuu--GU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 98907 | 0.75 | 0.843474 |
Target: 5'- cGGUcUCGACGACUUCAUgAGCgGGCu -3' miRNA: 3'- -CCGaAGCUGCUGGAGUAgUUGgUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 98681 | 0.69 | 0.985348 |
Target: 5'- cGGCa--GAuCGACCUCGacUCGAUCGACGu -3' miRNA: 3'- -CCGaagCU-GCUGGAGU--AGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 96237 | 0.68 | 0.99331 |
Target: 5'- cGCUUCGucaACGGCCcgGUCuuCCAGCAc -3' miRNA: 3'- cCGAAGC---UGCUGGagUAGuuGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 95839 | 0.66 | 0.999123 |
Target: 5'- cGGCggCGGCGGCCggggaggCGGCgGGCGg -3' miRNA: 3'- -CCGaaGCUGCUGGagua---GUUGgUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 93310 | 0.67 | 0.998262 |
Target: 5'- cGGCUUCGGCGACUaccugagcacgcugCA-CGGCCugAGCAc -3' miRNA: 3'- -CCGAAGCUGCUGGa-------------GUaGUUGG--UUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 92343 | 0.71 | 0.971618 |
Target: 5'- cGGCU-CGGCGuCaaCGUCGACCGGCu -3' miRNA: 3'- -CCGAaGCUGCuGgaGUAGUUGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 91880 | 0.69 | 0.985348 |
Target: 5'- uGGCggCGGCGGCCg---CGACgAGCAg -3' miRNA: 3'- -CCGaaGCUGCUGGaguaGUUGgUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 90973 | 0.72 | 0.954535 |
Target: 5'- cGCUUCGGCGugGCCUCGUaccgGGCCGAg- -3' miRNA: 3'- cCGAAGCUGC--UGGAGUAg---UUGGUUgu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 89883 | 0.67 | 0.996276 |
Target: 5'- uGGCgaaccgUCGACGACgucgccuUUCAUCGGCCcguuGGCGc -3' miRNA: 3'- -CCGa-----AGCUGCUG-------GAGUAGUUGG----UUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 86033 | 0.66 | 0.998932 |
Target: 5'- cGGCg--GACaGGCCUCAUCgGGCCGGg- -3' miRNA: 3'- -CCGaagCUG-CUGGAGUAG-UUGGUUgu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 83697 | 0.66 | 0.999283 |
Target: 5'- uGCgaCGACGGCCUCugcCAGauCCGACu -3' miRNA: 3'- cCGaaGCUGCUGGAGua-GUU--GGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 82051 | 0.69 | 0.991181 |
Target: 5'- cGGCggCGGCGGCgUCGUCcucggccucGCCGGCc -3' miRNA: 3'- -CCGaaGCUGCUGgAGUAGu--------UGGUUGu -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 81844 | 0.71 | 0.965454 |
Target: 5'- aGGuCUUCcuCGACCUCcgCAGCgGACAc -3' miRNA: 3'- -CC-GAAGcuGCUGGAGuaGUUGgUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 81463 | 0.66 | 0.999123 |
Target: 5'- aGCUcuuauaUCGACGuCCgc-UCGGCCAGCGu -3' miRNA: 3'- cCGA------AGCUGCuGGaguAGUUGGUUGU- -5' |
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10731 | 3' | -49.9 | NC_002794.1 | + | 81430 | 0.7 | 0.981503 |
Target: 5'- cGGCUUCGA-GACCgcgCcUguGCCGACGu -3' miRNA: 3'- -CCGAAGCUgCUGGa--GuAguUGGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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