miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 65902 0.75 0.843474
Target:  5'- cGCgUCGACGACCUugacCGUCGucGCCGGCGg -3'
miRNA:   3'- cCGaAGCUGCUGGA----GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 65800 0.71 0.958405
Target:  5'- aGGCgUUGACGACgUCcguuUCGAUCAGCGc -3'
miRNA:   3'- -CCGaAGCUGCUGgAGu---AGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 65249 0.69 0.991181
Target:  5'- cGGCggCGAucCGGCCUCGcCGAgCGGCGg -3'
miRNA:   3'- -CCGaaGCU--GCUGGAGUaGUUgGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 64409 0.68 0.995712
Target:  5'- gGGCcaccgUCGucauccccaACGGCUUCAgcgcCAACCAGCAa -3'
miRNA:   3'- -CCGa----AGC---------UGCUGGAGUa---GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 58506 0.72 0.950428
Target:  5'- uGC-UCGACGugCUCGUCcACgGGCAc -3'
miRNA:   3'- cCGaAGCUGCugGAGUAGuUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 57619 0.74 0.895864
Target:  5'- aGGCggcCGACGACCUgGcCGACCcGCAg -3'
miRNA:   3'- -CCGaa-GCUGCUGGAgUaGUUGGuUGU- -5'
10731 3' -49.9 NC_002794.1 + 57418 0.67 0.997774
Target:  5'- uGGC--CGGCGugCUgGUCGGCaCGGCGc -3'
miRNA:   3'- -CCGaaGCUGCugGAgUAGUUG-GUUGU- -5'
10731 3' -49.9 NC_002794.1 + 56848 0.85 0.353516
Target:  5'- cGCUUCGACGACCUCAaCAagaugagcACCGGCAa -3'
miRNA:   3'- cCGAAGCUGCUGGAGUaGU--------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 56363 0.76 0.790741
Target:  5'- aGGCggUCGACGugCUCGggaUCcACCGGCAc -3'
miRNA:   3'- -CCGa-AGCUGCugGAGU---AGuUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 55298 0.68 0.995712
Target:  5'- gGGCggCGGCGGCgUCG-CGGCgGGCGc -3'
miRNA:   3'- -CCGaaGCUGCUGgAGUaGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 54485 0.69 0.989933
Target:  5'- uGGCggUGGCGGCUUUgaacCAACCGACGu -3'
miRNA:   3'- -CCGaaGCUGCUGGAGua--GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 53874 0.7 0.981503
Target:  5'- cGGUcUCGGCGGacuCCUCGUCGGgacuCCGGCGg -3'
miRNA:   3'- -CCGaAGCUGCU---GGAGUAGUU----GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 53279 0.66 0.999105
Target:  5'- gGGCggCGAgCGACCacUCcaggugccgagcgGUCGGCCGGCGc -3'
miRNA:   3'- -CCGaaGCU-GCUGG--AG-------------UAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 49420 0.69 0.989933
Target:  5'- cGGCggCGGCGGCCgUCAcggCGuCCGGCGc -3'
miRNA:   3'- -CCGaaGCUGCUGG-AGUa--GUuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 49016 0.7 0.98351
Target:  5'- cGCcgCGGCGGCCgcggCGUCGuCCGGCGc -3'
miRNA:   3'- cCGaaGCUGCUGGa---GUAGUuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 48939 0.71 0.958405
Target:  5'- aGGCgcUCGGCGACCUCuucgcagaCGGCgAGCAg -3'
miRNA:   3'- -CCGa-AGCUGCUGGAGua------GUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 48860 0.65 0.999367
Target:  5'- gGGCgcgauaguccccgUCGGCGGCCagGUggcaGGCCAGCGu -3'
miRNA:   3'- -CCGa------------AGCUGCUGGagUAg---UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 46318 0.66 0.999123
Target:  5'- cGGCggCGACGGCgC-CGUCGccGCgGACGg -3'
miRNA:   3'- -CCGaaGCUGCUG-GaGUAGU--UGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 44747 0.66 0.998932
Target:  5'- gGGCUaaGACGGCgaCUCGUCGccgucCCGACGc -3'
miRNA:   3'- -CCGAagCUGCUG--GAGUAGUu----GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 44709 0.69 0.987025
Target:  5'- cGGCcgCGaccGCGGCgaCGUCGGCCGGCGc -3'
miRNA:   3'- -CCGaaGC---UGCUGgaGUAGUUGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.