miRNA display CGI


Results 101 - 120 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 67394 0.68 0.99331
Target:  5'- cGGCgccagcgUCGGCG-CCagCGUCGgcGCCAGCGu -3'
miRNA:   3'- -CCGa------AGCUGCuGGa-GUAGU--UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 96237 0.68 0.99331
Target:  5'- cGCUUCGucaACGGCCcgGUCuuCCAGCAc -3'
miRNA:   3'- cCGAAGC---UGCUGGagUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 5676 0.68 0.992304
Target:  5'- cGGC--CGAUGACCUgAUCAACaugGACGc -3'
miRNA:   3'- -CCGaaGCUGCUGGAgUAGUUGg--UUGU- -5'
10731 3' -49.9 NC_002794.1 + 191682 0.68 0.992304
Target:  5'- cGGCggCGGCGugcCCUCGUCGcggACCAc-- -3'
miRNA:   3'- -CCGaaGCUGCu--GGAGUAGU---UGGUugu -5'
10731 3' -49.9 NC_002794.1 + 65249 0.69 0.991181
Target:  5'- cGGCggCGAucCGGCCUCGcCGAgCGGCGg -3'
miRNA:   3'- -CCGaaGCU--GCUGGAGUaGUUgGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 99739 0.68 0.995712
Target:  5'- uGCUgUCGAagGACCUgGUCuGGCCGACGu -3'
miRNA:   3'- cCGA-AGCUg-CUGGAgUAG-UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 64409 0.68 0.995712
Target:  5'- gGGCcaccgUCGucauccccaACGGCUUCAgcgcCAACCAGCAa -3'
miRNA:   3'- -CCGa----AGC---------UGCUGGAGUa---GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 186345 0.67 0.997774
Target:  5'- cGGCggCGGCGACgUgccCGACCAGCc -3'
miRNA:   3'- -CCGaaGCUGCUGgAguaGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 75383 0.67 0.997532
Target:  5'- cGGCggCGGCGGCCUCuccccgucccuccucGUCcGCCGu-- -3'
miRNA:   3'- -CCGaaGCUGCUGGAG---------------UAGuUGGUugu -5'
10731 3' -49.9 NC_002794.1 + 133491 0.67 0.997774
Target:  5'- uGGCUuucgCGGCGACC-CGUCcgaCGGCGa -3'
miRNA:   3'- -CCGAa---GCUGCUGGaGUAGuugGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 57418 0.67 0.997774
Target:  5'- uGGC--CGGCGugCUgGUCGGCaCGGCGc -3'
miRNA:   3'- -CCGaaGCUGCugGAgUAGUUG-GUUGU- -5'
10731 3' -49.9 NC_002794.1 + 77404 0.67 0.997359
Target:  5'- uGGCcgUCGGCGAgauCCUgCAccaGACCGACAc -3'
miRNA:   3'- -CCGa-AGCUGCU---GGA-GUag-UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 80082 0.67 0.997359
Target:  5'- aGCUcgCGACGACCcUCAUCu-CCAu-- -3'
miRNA:   3'- cCGAa-GCUGCUGG-AGUAGuuGGUugu -5'
10731 3' -49.9 NC_002794.1 + 182965 0.67 0.997359
Target:  5'- cGGCggcCGGCu-CCUCGUUcgAGCCGACGg -3'
miRNA:   3'- -CCGaa-GCUGcuGGAGUAG--UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 140321 0.67 0.996882
Target:  5'- cGGCUggagaaguccUUGGCGucucuGCCUUAUCGGCCcGACGu -3'
miRNA:   3'- -CCGA----------AGCUGC-----UGGAGUAGUUGG-UUGU- -5'
10731 3' -49.9 NC_002794.1 + 44170 0.67 0.996882
Target:  5'- cGGCgcgagCGGCGG-CUCGUCGACUccgGGCGa -3'
miRNA:   3'- -CCGaa---GCUGCUgGAGUAGUUGG---UUGU- -5'
10731 3' -49.9 NC_002794.1 + 89883 0.67 0.996276
Target:  5'- uGGCgaaccgUCGACGACgucgccuUUCAUCGGCCcguuGGCGc -3'
miRNA:   3'- -CCGa-----AGCUGCUG-------GAGUAGUUGG----UUGU- -5'
10731 3' -49.9 NC_002794.1 + 75479 0.67 0.996335
Target:  5'- cGGCgccgaGACGGCCcgCGUacgAGCCGGCAa -3'
miRNA:   3'- -CCGaag--CUGCUGGa-GUAg--UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 17249 0.68 0.995971
Target:  5'- -cCUUCGACGGCggcgacccggCUCGUCAcccgggcacgccgccGCCGACGg -3'
miRNA:   3'- ccGAAGCUGCUG----------GAGUAGU---------------UGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 159951 0.68 0.995712
Target:  5'- cGGUuUUCGACGAag--GUCGACCGACGu -3'
miRNA:   3'- -CCG-AAGCUGCUggagUAGUUGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.