miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10731 3' -49.9 NC_002794.1 + 35773 0.66 0.999283
Target:  5'- cGGCaccgUCGcCGGCgUCGUCu-CCGGCGu -3'
miRNA:   3'- -CCGa---AGCuGCUGgAGUAGuuGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 33878 0.66 0.999283
Target:  5'- aGCggaUCGugGAgCUCAUgGAgCGGCAc -3'
miRNA:   3'- cCGa--AGCugCUgGAGUAgUUgGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 150845 0.66 0.999283
Target:  5'- aGCUccagCGGCGGCCgCGUCuacgccuauAGCCGGCGc -3'
miRNA:   3'- cCGAa---GCUGCUGGaGUAG---------UUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 193747 0.66 0.999283
Target:  5'- cGGCUUCGGCGAgCga--CcGCCGGCc -3'
miRNA:   3'- -CCGAAGCUGCUgGaguaGuUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 66748 0.66 0.999283
Target:  5'- cGGCggcgCGuACGACCgc-UgGACCAGCGa -3'
miRNA:   3'- -CCGaa--GC-UGCUGGaguAgUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 81463 0.66 0.999123
Target:  5'- aGCUcuuauaUCGACGuCCgc-UCGGCCAGCGu -3'
miRNA:   3'- cCGA------AGCUGCuGGaguAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 79430 0.66 0.999123
Target:  5'- gGGCccggCGGCGGCggCggCGACCGGCGc -3'
miRNA:   3'- -CCGaa--GCUGCUGgaGuaGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 93310 0.67 0.998262
Target:  5'- cGGCUUCGGCGACUaccugagcacgcugCA-CGGCCugAGCAc -3'
miRNA:   3'- -CCGAAGCUGCUGGa-------------GUaGUUGG--UUGU- -5'
10731 3' -49.9 NC_002794.1 + 81266 0.66 0.998324
Target:  5'- uGGcCUUCGcccgccagcaacuCGACCUCcgCAACCugcuGCAc -3'
miRNA:   3'- -CC-GAAGCu------------GCUGGAGuaGUUGGu---UGU- -5'
10731 3' -49.9 NC_002794.1 + 106447 0.66 0.998442
Target:  5'- aGGCggugcaGGCgGACCUCGUC-GCCGugAc -3'
miRNA:   3'- -CCGaag---CUG-CUGGAGUAGuUGGUugU- -5'
10731 3' -49.9 NC_002794.1 + 68295 0.66 0.998706
Target:  5'- gGGCguaCGAacGCCUCGUggCGGCCGACGc -3'
miRNA:   3'- -CCGaa-GCUgcUGGAGUA--GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 116941 0.66 0.998706
Target:  5'- cGGCgucccCGGCGGCggCGUCGGCgGGCGc -3'
miRNA:   3'- -CCGaa---GCUGCUGgaGUAGUUGgUUGU- -5'
10731 3' -49.9 NC_002794.1 + 44747 0.66 0.998932
Target:  5'- gGGCUaaGACGGCgaCUCGUCGccgucCCGACGc -3'
miRNA:   3'- -CCGAagCUGCUG--GAGUAGUu----GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 185523 0.66 0.998706
Target:  5'- cGGCgucaUGACGcGCCUCAUCucGCCAc-- -3'
miRNA:   3'- -CCGaa--GCUGC-UGGAGUAGu-UGGUugu -5'
10731 3' -49.9 NC_002794.1 + 78337 0.66 0.998932
Target:  5'- gGGCggaGGCG-CCggaaUGUCGGCCAGCAg -3'
miRNA:   3'- -CCGaagCUGCuGGa---GUAGUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 31414 0.66 0.998932
Target:  5'- cGCgccCGcCGcCUUCGUCGACCAGCu -3'
miRNA:   3'- cCGaa-GCuGCuGGAGUAGUUGGUUGu -5'
10731 3' -49.9 NC_002794.1 + 30580 0.66 0.998952
Target:  5'- aGCgu-GACGACCUCGUCcuucgugaacccuuCCAACGu -3'
miRNA:   3'- cCGaagCUGCUGGAGUAGuu------------GGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 86033 0.66 0.998932
Target:  5'- cGGCg--GACaGGCCUCAUCgGGCCGGg- -3'
miRNA:   3'- -CCGaagCUG-CUGGAGUAG-UUGGUUgu -5'
10731 3' -49.9 NC_002794.1 + 32204 0.66 0.998932
Target:  5'- uGGCgUUCGACGAUgUCccggaugacCGGCCAAUAc -3'
miRNA:   3'- -CCG-AAGCUGCUGgAGua-------GUUGGUUGU- -5'
10731 3' -49.9 NC_002794.1 + 53279 0.66 0.999105
Target:  5'- gGGCggCGAgCGACCacUCcaggugccgagcgGUCGGCCGGCGc -3'
miRNA:   3'- -CCGaaGCU-GCUGG--AG-------------UAGUUGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.