Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 140662 | 0.66 | 0.981716 |
|
Target: 5'- cGCGCagcuuuUGGGUcGggCGcAGGUCggUGCGACg -3' miRNA: 3'- aCGCG------ACCCA-CaaGC-UCUAG--AUGCUG- -5' |
|||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 100597 | 0.66 | 0.979582 |
|
Target: 5'- gUGCGCgccgaucccggGGGUGUU---GGUCUACGAg -3' miRNA: 3'- -ACGCGa----------CCCACAAgcuCUAGAUGCUg -5' |
|||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 104526 | 0.68 | 0.955454 |
|
Target: 5'- gGCGC-GGGUGgcgCGGGAagagCUGCGcCa -3' miRNA: 3'- aCGCGaCCCACaa-GCUCUa---GAUGCuG- -5' |
|||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 94780 | 0.68 | 0.955454 |
|
Target: 5'- gGCGCUGGGcgaGUUCGA-----GCGGCa -3' miRNA: 3'- aCGCGACCCa--CAAGCUcuagaUGCUG- -5' |
|||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 14304 | 0.68 | 0.951463 |
|
Target: 5'- gGCGCgGGGUagcuuuugGggCGAagacguGAUCUGCGACc -3' miRNA: 3'- aCGCGaCCCA--------CaaGCU------CUAGAUGCUG- -5' |
|||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 106327 | 0.68 | 0.94724 |
|
Target: 5'- cGCGCgacGGGUcgacgGUUCGccGGGUCgACGGCg -3' miRNA: 3'- aCGCGa--CCCA-----CAAGC--UCUAGaUGCUG- -5' |
|||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 12620 | 0.69 | 0.927967 |
|
Target: 5'- cGCGuCUGGGgccgcUUCGAGcacacCUACGACg -3' miRNA: 3'- aCGC-GACCCac---AAGCUCua---GAUGCUG- -5' |
|||||||
| 10731 | 5' | -53.2 | NC_002794.1 | + | 150947 | 1.09 | 0.006785 |
|
Target: 5'- cUGCGCUGGGUGUUCGAGAUCUACGACc -3' miRNA: 3'- -ACGCGACCCACAAGCUCUAGAUGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home