miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10732 3' -61 NC_002794.1 + 113930 0.66 0.8177
Target:  5'- gCCGcCGAGGCgacGGGCCgcug--CCGGGc -3'
miRNA:   3'- -GGC-GCUCCGa--CCUGGaccucaGGCCC- -5'
10732 3' -61 NC_002794.1 + 89959 0.66 0.801275
Target:  5'- aCGuCGAGGCguucGGACCgUGGuGcgCCGGc -3'
miRNA:   3'- gGC-GCUCCGa---CCUGG-ACCuCa-GGCCc -5'
10732 3' -61 NC_002794.1 + 871 0.66 0.784315
Target:  5'- cCCGCGAGGCggucGGCgUGcgcgcGGG-CCGGGu -3'
miRNA:   3'- -GGCGCUCCGac--CUGgAC-----CUCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 149353 0.66 0.784315
Target:  5'- gUCGCgGGGGCgUGGAC--GGAGUCCGc- -3'
miRNA:   3'- -GGCG-CUCCG-ACCUGgaCCUCAGGCcc -5'
10732 3' -61 NC_002794.1 + 123509 0.66 0.775652
Target:  5'- aUCGCcGGGCUGccGGCCUGcagcuGGUUCGGGc -3'
miRNA:   3'- -GGCGcUCCGAC--CUGGACc----UCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 50585 0.67 0.757998
Target:  5'- gCGCGGcGGCUGGgugGCC-GGcG-CCGGGg -3'
miRNA:   3'- gGCGCU-CCGACC---UGGaCCuCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 184475 0.67 0.757998
Target:  5'- gCGCGAacGGCgcgcgGGGCCccGGAcGcCCGGGc -3'
miRNA:   3'- gGCGCU--CCGa----CCUGGa-CCU-CaGGCCC- -5'
10732 3' -61 NC_002794.1 + 6307 0.67 0.749021
Target:  5'- gCGUGAcccuGGCcacucUGGAUCUGuGGGcCCGGGa -3'
miRNA:   3'- gGCGCU----CCG-----ACCUGGAC-CUCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 156940 0.67 0.749021
Target:  5'- aCCGCGAGuCgGGGCCUcGGAGaugauuggCCGaGGa -3'
miRNA:   3'- -GGCGCUCcGaCCUGGA-CCUCa-------GGC-CC- -5'
10732 3' -61 NC_002794.1 + 105929 0.67 0.743591
Target:  5'- gCCGCcggacGGGCUGGACgcgcuguacgaacggCUGGGGgccgCCGcGGa -3'
miRNA:   3'- -GGCGc----UCCGACCUG---------------GACCUCa---GGC-CC- -5'
10732 3' -61 NC_002794.1 + 95759 0.67 0.739954
Target:  5'- cUCGCGGGGCgGcGGCCgcgacGGcGG-CCGGGg -3'
miRNA:   3'- -GGCGCUCCGaC-CUGGa----CC-UCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 137572 0.67 0.739954
Target:  5'- gCCGuCGccGCcgGGGCC-GGAGUgCGGGg -3'
miRNA:   3'- -GGC-GCucCGa-CCUGGaCCUCAgGCCC- -5'
10732 3' -61 NC_002794.1 + 36004 0.67 0.739043
Target:  5'- gUCGCGGGGCUcGGGCggcGGAauccgccGUCCGGc -3'
miRNA:   3'- -GGCGCUCCGA-CCUGga-CCU-------CAGGCCc -5'
10732 3' -61 NC_002794.1 + 134685 0.67 0.729886
Target:  5'- gCCGCGcuuGGCUcgaccgccucuggGGGCC-GGAGUUgCGGGc -3'
miRNA:   3'- -GGCGCu--CCGA-------------CCUGGaCCUCAG-GCCC- -5'
10732 3' -61 NC_002794.1 + 1551 0.67 0.721582
Target:  5'- gUC-CGAGGCacccgccGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 1740 0.67 0.721582
Target:  5'- gUC-CGAGGCacccaucGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 1886 0.67 0.721582
Target:  5'- gUC-CGAGGCacccgccGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 1813 0.67 0.721582
Target:  5'- gUC-CGAGGCacccgucGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 129686 0.67 0.721582
Target:  5'- cUCGCGGGGUgcUGGACaccaugUGGGGcaUCCGGc -3'
miRNA:   3'- -GGCGCUCCG--ACCUGg-----ACCUC--AGGCCc -5'
10732 3' -61 NC_002794.1 + 92491 0.68 0.702942
Target:  5'- aCCGgugcguggaCGAGGCggccaUGGcCCUGGuGUCCGaGGu -3'
miRNA:   3'- -GGC---------GCUCCG-----ACCuGGACCuCAGGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.