miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10732 3' -61 NC_002794.1 + 150425 1.1 0.001368
Target:  5'- cCCGCGAGGCUGGACCUGGAGUCCGGGc -3'
miRNA:   3'- -GGCGCUCCGACCUGGACCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 115843 0.78 0.20529
Target:  5'- cCCgGCG-GGCUcGGGCCUGGgacgcgcgaggGGUCCGGGg -3'
miRNA:   3'- -GG-CGCuCCGA-CCUGGACC-----------UCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 92306 0.76 0.28781
Target:  5'- -gGCGGGGCUGGGCgCgggcggcgGGGGcCCGGGc -3'
miRNA:   3'- ggCGCUCCGACCUG-Ga-------CCUCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 21873 0.74 0.341578
Target:  5'- uCCGCGAGGCcGG-CCgcggGGuGUCCGcGGc -3'
miRNA:   3'- -GGCGCUCCGaCCuGGa---CCuCAGGC-CC- -5'
10732 3' -61 NC_002794.1 + 186203 0.73 0.418436
Target:  5'- aCCGCG-GGCcccaGGGCagaUGGcGGUCCGGGu -3'
miRNA:   3'- -GGCGCuCCGa---CCUGg--ACC-UCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 128406 0.72 0.469305
Target:  5'- -gGCGAGG--GGACCggGGAGaCCGGGa -3'
miRNA:   3'- ggCGCUCCgaCCUGGa-CCUCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 32590 0.71 0.504915
Target:  5'- gCCGgggcCGGGGCcgGGGCC-GGGG-CCGGGg -3'
miRNA:   3'- -GGC----GCUCCGa-CCUGGaCCUCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 122327 0.7 0.541639
Target:  5'- gCGCGuGGCguUGGcCCUGGccGUCCGGa -3'
miRNA:   3'- gGCGCuCCG--ACCuGGACCu-CAGGCCc -5'
10732 3' -61 NC_002794.1 + 70275 0.7 0.55003
Target:  5'- gCCGCGaAGGCcGGagagcagGCCgggGGGGcCCGGGc -3'
miRNA:   3'- -GGCGC-UCCGaCC-------UGGa--CCUCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 67040 0.7 0.57921
Target:  5'- gCCGCGucGC-GGACCcGGcGUCCGuGGg -3'
miRNA:   3'- -GGCGCucCGaCCUGGaCCuCAGGC-CC- -5'
10732 3' -61 NC_002794.1 + 20390 0.69 0.617306
Target:  5'- aCGCGGugcGGCgGGACCgGGAG-CgGGGc -3'
miRNA:   3'- gGCGCU---CCGaCCUGGaCCUCaGgCCC- -5'
10732 3' -61 NC_002794.1 + 1949 0.69 0.617306
Target:  5'- gUC-CGAGGCgcccgccGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 2011 0.69 0.617306
Target:  5'- gUC-CGAGGCgcccgccGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 37312 0.69 0.646
Target:  5'- aCGCGGGGCagaagacGGAgCggUGGGGcCCGGGc -3'
miRNA:   3'- gGCGCUCCGa------CCUgG--ACCUCaGGCCC- -5'
10732 3' -61 NC_002794.1 + 94147 0.69 0.646
Target:  5'- aCCGCGgcGGcGCUGGACggUGGGGgggaCGGGg -3'
miRNA:   3'- -GGCGC--UC-CGACCUGg-ACCUCag--GCCC- -5'
10732 3' -61 NC_002794.1 + 187956 0.68 0.684092
Target:  5'- gCGCGAGcGCgGGACCUcgGGAGgccgcucauUgCGGGa -3'
miRNA:   3'- gGCGCUC-CGaCCUGGA--CCUC---------AgGCCC- -5'
10732 3' -61 NC_002794.1 + 92491 0.68 0.702942
Target:  5'- aCCGgugcguggaCGAGGCggccaUGGcCCUGGuGUCCGaGGu -3'
miRNA:   3'- -GGC---------GCUCCG-----ACCuGGACCuCAGGC-CC- -5'
10732 3' -61 NC_002794.1 + 129686 0.67 0.721582
Target:  5'- cUCGCGGGGUgcUGGACaccaugUGGGGcaUCCGGc -3'
miRNA:   3'- -GGCGCUCCG--ACCUGg-----ACCUC--AGGCCc -5'
10732 3' -61 NC_002794.1 + 1886 0.67 0.721582
Target:  5'- gUC-CGAGGCacccgccGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5'
10732 3' -61 NC_002794.1 + 1740 0.67 0.721582
Target:  5'- gUC-CGAGGCacccaucGGCCUuauacGGGGUCCGGGg -3'
miRNA:   3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.