Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10732 | 3' | -61 | NC_002794.1 | + | 871 | 0.66 | 0.784315 |
Target: 5'- cCCGCGAGGCggucGGCgUGcgcgcGGG-CCGGGu -3' miRNA: 3'- -GGCGCUCCGac--CUGgAC-----CUCaGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 1551 | 0.67 | 0.721582 |
Target: 5'- gUC-CGAGGCacccgccGGCCUuauacGGGGUCCGGGg -3' miRNA: 3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 1740 | 0.67 | 0.721582 |
Target: 5'- gUC-CGAGGCacccaucGGCCUuauacGGGGUCCGGGg -3' miRNA: 3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 1813 | 0.67 | 0.721582 |
Target: 5'- gUC-CGAGGCacccgucGGCCUuauacGGGGUCCGGGg -3' miRNA: 3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 1886 | 0.67 | 0.721582 |
Target: 5'- gUC-CGAGGCacccgccGGCCUuauacGGGGUCCGGGg -3' miRNA: 3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 1949 | 0.69 | 0.617306 |
Target: 5'- gUC-CGAGGCgcccgccGGCCUuauacGGGGUCCGGGg -3' miRNA: 3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 2011 | 0.69 | 0.617306 |
Target: 5'- gUC-CGAGGCgcccgccGGCCUuauacGGGGUCCGGGg -3' miRNA: 3'- -GGcGCUCCGac-----CUGGA-----CCUCAGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 6307 | 0.67 | 0.749021 |
Target: 5'- gCGUGAcccuGGCcacucUGGAUCUGuGGGcCCGGGa -3' miRNA: 3'- gGCGCU----CCG-----ACCUGGAC-CUCaGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 20390 | 0.69 | 0.617306 |
Target: 5'- aCGCGGugcGGCgGGACCgGGAG-CgGGGc -3' miRNA: 3'- gGCGCU---CCGaCCUGGaCCUCaGgCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 21873 | 0.74 | 0.341578 |
Target: 5'- uCCGCGAGGCcGG-CCgcggGGuGUCCGcGGc -3' miRNA: 3'- -GGCGCUCCGaCCuGGa---CCuCAGGC-CC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 32590 | 0.71 | 0.504915 |
Target: 5'- gCCGgggcCGGGGCcgGGGCC-GGGG-CCGGGg -3' miRNA: 3'- -GGC----GCUCCGa-CCUGGaCCUCaGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 36004 | 0.67 | 0.739043 |
Target: 5'- gUCGCGGGGCUcGGGCggcGGAauccgccGUCCGGc -3' miRNA: 3'- -GGCGCUCCGA-CCUGga-CCU-------CAGGCCc -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 37312 | 0.69 | 0.646 |
Target: 5'- aCGCGGGGCagaagacGGAgCggUGGGGcCCGGGc -3' miRNA: 3'- gGCGCUCCGa------CCUgG--ACCUCaGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 50585 | 0.67 | 0.757998 |
Target: 5'- gCGCGGcGGCUGGgugGCC-GGcG-CCGGGg -3' miRNA: 3'- gGCGCU-CCGACC---UGGaCCuCaGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 67040 | 0.7 | 0.57921 |
Target: 5'- gCCGCGucGC-GGACCcGGcGUCCGuGGg -3' miRNA: 3'- -GGCGCucCGaCCUGGaCCuCAGGC-CC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 70275 | 0.7 | 0.55003 |
Target: 5'- gCCGCGaAGGCcGGagagcagGCCgggGGGGcCCGGGc -3' miRNA: 3'- -GGCGC-UCCGaCC-------UGGa--CCUCaGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 89959 | 0.66 | 0.801275 |
Target: 5'- aCGuCGAGGCguucGGACCgUGGuGcgCCGGc -3' miRNA: 3'- gGC-GCUCCGa---CCUGG-ACCuCa-GGCCc -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 92306 | 0.76 | 0.28781 |
Target: 5'- -gGCGGGGCUGGGCgCgggcggcgGGGGcCCGGGc -3' miRNA: 3'- ggCGCUCCGACCUG-Ga-------CCUCaGGCCC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 92491 | 0.68 | 0.702942 |
Target: 5'- aCCGgugcguggaCGAGGCggccaUGGcCCUGGuGUCCGaGGu -3' miRNA: 3'- -GGC---------GCUCCG-----ACCuGGACCuCAGGC-CC- -5' |
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10732 | 3' | -61 | NC_002794.1 | + | 94147 | 0.69 | 0.646 |
Target: 5'- aCCGCGgcGGcGCUGGACggUGGGGgggaCGGGg -3' miRNA: 3'- -GGCGC--UC-CGACCUGg-ACCUCag--GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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