miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10732 5' -60.5 NC_002794.1 + 83869 0.66 0.763782
Target:  5'- cGUCCCGGucGGCgcgacggcCCCGGgcucGGCg -3'
miRNA:   3'- -UAGGGCCuuCCGa-------GGGCCaagaCCGa -5'
10732 5' -60.5 NC_002794.1 + 119074 0.66 0.763782
Target:  5'- cGUCgCGGAcguacucGGCgCCCGGUUgCUGGUg -3'
miRNA:   3'- -UAGgGCCUu------CCGaGGGCCAA-GACCGa -5'
10732 5' -60.5 NC_002794.1 + 93086 0.66 0.745279
Target:  5'- uUCCCGGGcugcGGCcucuccugCCUGGacUUCUGGCa -3'
miRNA:   3'- uAGGGCCUu---CCGa-------GGGCC--AAGACCGa -5'
10732 5' -60.5 NC_002794.1 + 17929 0.66 0.745279
Target:  5'- --aCCGGccGGCUCCCcGacCUGGCg -3'
miRNA:   3'- uagGGCCuuCCGAGGGcCaaGACCGa -5'
10732 5' -60.5 NC_002794.1 + 86895 0.66 0.745279
Target:  5'- gAUCCCGGcGGGGCcgccgaCCCGGUgacgCccgUGGCg -3'
miRNA:   3'- -UAGGGCC-UUCCGa-----GGGCCAa---G---ACCGa -5'
10732 5' -60.5 NC_002794.1 + 135448 0.67 0.697553
Target:  5'- -aCCCGacGGGCUCCCGGggCccgcGGCc -3'
miRNA:   3'- uaGGGCcuUCCGAGGGCCaaGa---CCGa -5'
10732 5' -60.5 NC_002794.1 + 50785 0.67 0.687822
Target:  5'- cGUCUCGGgcGGCgccuccucgCCCGGcgUCgGGCg -3'
miRNA:   3'- -UAGGGCCuuCCGa--------GGGCCa-AGaCCGa -5'
10732 5' -60.5 NC_002794.1 + 137326 0.69 0.589405
Target:  5'- uUCCgCGGAAGGUUCCgCGGacggCUcGGCg -3'
miRNA:   3'- uAGG-GCCUUCCGAGG-GCCaa--GA-CCGa -5'
10732 5' -60.5 NC_002794.1 + 186029 0.7 0.531281
Target:  5'- -gCCCGGAcccGGGC-CCCGG--CUGGCc -3'
miRNA:   3'- uaGGGCCU---UCCGaGGGCCaaGACCGa -5'
10732 5' -60.5 NC_002794.1 + 503 0.71 0.439758
Target:  5'- -gCCUGGGugGGGCguugccUCCGGUUCUGGCc -3'
miRNA:   3'- uaGGGCCU--UCCGa-----GGGCCAAGACCGa -5'
10732 5' -60.5 NC_002794.1 + 150460 1.05 0.002558
Target:  5'- gAUCCCGGAAGGCUCCCGGUUCUGGCUc -3'
miRNA:   3'- -UAGGGCCUUCCGAGGGCCAAGACCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.