miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10733 3' -59.3 NC_002794.1 + 85062 0.66 0.844841
Target:  5'- cGACcgGccACGCCGCGuCUGCGCccCCGGUc -3'
miRNA:   3'- -CUGa-C--UGCGGCGU-GAUGCGc-GGCCAc -5'
10733 3' -59.3 NC_002794.1 + 122662 0.66 0.844841
Target:  5'- uGCUGGCGgCGCAggcccgGCuGUGCCGGUc -3'
miRNA:   3'- cUGACUGCgGCGUga----UG-CGCGGCCAc -5'
10733 3' -59.3 NC_002794.1 + 48037 0.66 0.844841
Target:  5'- cGCcgGACGCCG-AgUGCGUGCUGGg- -3'
miRNA:   3'- cUGa-CUGCGGCgUgAUGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 146693 0.66 0.844841
Target:  5'- cGCUcGAgGCCG-ACUGCGggaGCUGGUGg -3'
miRNA:   3'- cUGA-CUgCGGCgUGAUGCg--CGGCCAC- -5'
10733 3' -59.3 NC_002794.1 + 100297 0.66 0.844066
Target:  5'- cGGCUGGUGCCGC-CUccgccgcuggcacGCGCGgCCGGc- -3'
miRNA:   3'- -CUGACUGCGGCGuGA-------------UGCGC-GGCCac -5'
10733 3' -59.3 NC_002794.1 + 33640 0.66 0.83701
Target:  5'- cGGCac-CGCCGCACggGCGCGCUGagcGUGc -3'
miRNA:   3'- -CUGacuGCGGCGUGa-UGCGCGGC---CAC- -5'
10733 3' -59.3 NC_002794.1 + 89711 0.66 0.83701
Target:  5'- ---cGGCGCCGCGgUGCcgauccgcgcgGCGUCGGUc -3'
miRNA:   3'- cugaCUGCGGCGUgAUG-----------CGCGGCCAc -5'
10733 3' -59.3 NC_002794.1 + 64111 0.66 0.83701
Target:  5'- cGACcGGCGCgucUGCACgcggucgACGgGCUGGUGc -3'
miRNA:   3'- -CUGaCUGCG---GCGUGa------UGCgCGGCCAC- -5'
10733 3' -59.3 NC_002794.1 + 37736 0.66 0.83701
Target:  5'- cGGC-GGCGCCGCcgGCggcgGCGCGgCGGc- -3'
miRNA:   3'- -CUGaCUGCGGCG--UGa---UGCGCgGCCac -5'
10733 3' -59.3 NC_002794.1 + 91275 0.66 0.83701
Target:  5'- gGACcGGCGCgGcCugUACGUGUCGGc- -3'
miRNA:   3'- -CUGaCUGCGgC-GugAUGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 194986 0.66 0.83701
Target:  5'- aGGCacaGCGCCGCGCgcACGCccuGCCGGg- -3'
miRNA:   3'- -CUGac-UGCGGCGUGa-UGCG---CGGCCac -5'
10733 3' -59.3 NC_002794.1 + 122601 0.66 0.832228
Target:  5'- gGGCUGGCGCugagccugaacgucaCGCgcgGCUACGgGCacgCGGUGg -3'
miRNA:   3'- -CUGACUGCG---------------GCG---UGAUGCgCG---GCCAC- -5'
10733 3' -59.3 NC_002794.1 + 30742 0.66 0.829006
Target:  5'- aACUGGcCGCgGCug-GCGCGCUGGa- -3'
miRNA:   3'- cUGACU-GCGgCGugaUGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 92269 0.66 0.829006
Target:  5'- cGGC-GGCGCCGgGCgagGCGCGCaaGGUc -3'
miRNA:   3'- -CUGaCUGCGGCgUGa--UGCGCGg-CCAc -5'
10733 3' -59.3 NC_002794.1 + 185426 0.66 0.829006
Target:  5'- cGACUcGACGCgGCGCcAUGCGCggacaGGUc -3'
miRNA:   3'- -CUGA-CUGCGgCGUGaUGCGCGg----CCAc -5'
10733 3' -59.3 NC_002794.1 + 91121 0.66 0.829006
Target:  5'- aGCUGGUGCCGUGCguggaggagGCGCGgaCGGUGc -3'
miRNA:   3'- cUGACUGCGGCGUGa--------UGCGCg-GCCAC- -5'
10733 3' -59.3 NC_002794.1 + 192385 0.66 0.829006
Target:  5'- gGGCUGAcCGCCacCGC--CGCGCCGGg- -3'
miRNA:   3'- -CUGACU-GCGGc-GUGauGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 134877 0.66 0.827385
Target:  5'- cACcGACGCCuGCGCgcguuguaucggACGCGCUcgGGUGa -3'
miRNA:   3'- cUGaCUGCGG-CGUGa-----------UGCGCGG--CCAC- -5'
10733 3' -59.3 NC_002794.1 + 57937 0.66 0.820836
Target:  5'- cGACUu-CGCCgacGCGCUGCGCaGCCuGUGc -3'
miRNA:   3'- -CUGAcuGCGG---CGUGAUGCG-CGGcCAC- -5'
10733 3' -59.3 NC_002794.1 + 195537 0.66 0.820836
Target:  5'- cGGCgGACGCCGCACccACGCccugaGCCGc-- -3'
miRNA:   3'- -CUGaCUGCGGCGUGa-UGCG-----CGGCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.