miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10733 3' -59.3 NC_002794.1 + 150275 1.07 0.002427
Target:  5'- cGACUGACGCCGCACUACGCGCCGGUGu -3'
miRNA:   3'- -CUGACUGCGGCGUGAUGCGCGGCCAC- -5'
10733 3' -59.3 NC_002794.1 + 111752 0.79 0.196401
Target:  5'- aGCUGGCGCCGCGCgGCGCcGUCGGg- -3'
miRNA:   3'- cUGACUGCGGCGUGaUGCG-CGGCCac -5'
10733 3' -59.3 NC_002794.1 + 19310 0.78 0.215516
Target:  5'- cGCUGAccgcccaCGCCGCGCUggcgacccGCGCGCCGGUc -3'
miRNA:   3'- cUGACU-------GCGGCGUGA--------UGCGCGGCCAc -5'
10733 3' -59.3 NC_002794.1 + 126111 0.77 0.278745
Target:  5'- cGGCccugGGCGCCGCGCUcgucUGCGCCGGUu -3'
miRNA:   3'- -CUGa---CUGCGGCGUGAu---GCGCGGCCAc -5'
10733 3' -59.3 NC_002794.1 + 18061 0.74 0.394425
Target:  5'- uGCUGcACGCCGCcuguCUguGCGUGUCGGUGg -3'
miRNA:   3'- cUGAC-UGCGGCGu---GA--UGCGCGGCCAC- -5'
10733 3' -59.3 NC_002794.1 + 19794 0.74 0.394425
Target:  5'- -cCUGACGCUGCuccGCUcggaccGCGCGCCGGa- -3'
miRNA:   3'- cuGACUGCGGCG---UGA------UGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 76536 0.73 0.436422
Target:  5'- cGGCcgcGGCGCCGaCGCggucGCGCGCCGGg- -3'
miRNA:   3'- -CUGa--CUGCGGC-GUGa---UGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 47941 0.73 0.445127
Target:  5'- aGAUcGGCGCCGCGCgucccgGCGCCGGcUGg -3'
miRNA:   3'- -CUGaCUGCGGCGUGaug---CGCGGCC-AC- -5'
10733 3' -59.3 NC_002794.1 + 108112 0.73 0.453929
Target:  5'- gGACguggaGACGCCGCGCUAUcagaaCGCCGGcUGg -3'
miRNA:   3'- -CUGa----CUGCGGCGUGAUGc----GCGGCC-AC- -5'
10733 3' -59.3 NC_002794.1 + 151621 0.73 0.453929
Target:  5'- cGGCUGACgGCCgGCACUugGCucgccGCCGGc- -3'
miRNA:   3'- -CUGACUG-CGG-CGUGAugCG-----CGGCCac -5'
10733 3' -59.3 NC_002794.1 + 128164 0.72 0.490038
Target:  5'- cGGCUcGCGCCGCGg-ACGgGUCGGUGa -3'
miRNA:   3'- -CUGAcUGCGGCGUgaUGCgCGGCCAC- -5'
10733 3' -59.3 NC_002794.1 + 12195 0.72 0.490038
Target:  5'- cGGCcgGGCGCCGCucggACGUGCCGGc- -3'
miRNA:   3'- -CUGa-CUGCGGCGuga-UGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 108191 0.72 0.499275
Target:  5'- gGACUGcgagcgGCGCUGCGCcgcCGCGCCGGc- -3'
miRNA:   3'- -CUGAC------UGCGGCGUGau-GCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 148760 0.72 0.508589
Target:  5'- uGAC-GACGUCGCGCUGgagUGCGCCuGGUa -3'
miRNA:   3'- -CUGaCUGCGGCGUGAU---GCGCGG-CCAc -5'
10733 3' -59.3 NC_002794.1 + 102451 0.72 0.517975
Target:  5'- aGCUGACGCUcgaggagaugcgGCGCgucgGCGUGCCGGc- -3'
miRNA:   3'- cUGACUGCGG------------CGUGa---UGCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 81554 0.71 0.546525
Target:  5'- cGGCUGcCGCCGCcgccGCcgcCGCGCCGGa- -3'
miRNA:   3'- -CUGACuGCGGCG----UGau-GCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 35548 0.71 0.546525
Target:  5'- aGACccGGCGCuCGCGC-GCGCGCgUGGUGg -3'
miRNA:   3'- -CUGa-CUGCG-GCGUGaUGCGCG-GCCAC- -5'
10733 3' -59.3 NC_002794.1 + 135475 0.71 0.556155
Target:  5'- cGACgacGACGCCGC-CgucgACGCGCgCGGg- -3'
miRNA:   3'- -CUGa--CUGCGGCGuGa---UGCGCG-GCCac -5'
10733 3' -59.3 NC_002794.1 + 137416 0.71 0.556155
Target:  5'- cGCgGACGCCGCGgaGacCGCGCCGGc- -3'
miRNA:   3'- cUGaCUGCGGCGUgaU--GCGCGGCCac -5'
10733 3' -59.3 NC_002794.1 + 193819 0.71 0.565835
Target:  5'- -uCUGGCGCCGaCGCgucGCgGCGCCGGc- -3'
miRNA:   3'- cuGACUGCGGC-GUGa--UG-CGCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.