miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10733 5' -57.9 NC_002794.1 + 117219 0.65 0.887026
Target:  5'- -gCuCCGGCCGCGUCagggcgaccgacGCGUGCAc-- -3'
miRNA:   3'- uaGuGGCCGGCGCAGa-----------UGCACGUcac -5'
10733 5' -57.9 NC_002794.1 + 130663 0.66 0.881593
Target:  5'- -cCGCCGGCCGCGggCUcCGccGCGGc- -3'
miRNA:   3'- uaGUGGCCGGCGCa-GAuGCa-CGUCac -5'
10733 5' -57.9 NC_002794.1 + 116354 0.66 0.881593
Target:  5'- -gUACaCGGCCGCGcgguccgaccggUCggugGCGUGCGGg- -3'
miRNA:   3'- uaGUG-GCCGGCGC------------AGa---UGCACGUCac -5'
10733 5' -57.9 NC_002794.1 + 49962 0.66 0.874612
Target:  5'- gGUCGCCGGUCGCGUC-ACGa------ -3'
miRNA:   3'- -UAGUGGCCGGCGCAGaUGCacgucac -5'
10733 5' -57.9 NC_002794.1 + 20464 0.66 0.874612
Target:  5'- cUCugCGGCCcCGaagACGUGCAcGUGg -3'
miRNA:   3'- uAGugGCCGGcGCagaUGCACGU-CAC- -5'
10733 5' -57.9 NC_002794.1 + 85857 0.66 0.860032
Target:  5'- --gGCCGGCacacccggaaaGCGUgCUugGUGCAGa- -3'
miRNA:   3'- uagUGGCCGg----------CGCA-GAugCACGUCac -5'
10733 5' -57.9 NC_002794.1 + 76532 0.66 0.860032
Target:  5'- -cCACCGGCCGCGgCgcCGacGCGGUc -3'
miRNA:   3'- uaGUGGCCGGCGCaGauGCa-CGUCAc -5'
10733 5' -57.9 NC_002794.1 + 96742 0.66 0.852443
Target:  5'- -cCGCCGG-CGCGUCUcgcaaGCGgccgGCGGUc -3'
miRNA:   3'- uaGUGGCCgGCGCAGA-----UGCa---CGUCAc -5'
10733 5' -57.9 NC_002794.1 + 54260 0.66 0.852443
Target:  5'- -cCACgGcGCCGCGUCgggccaaacCGUGCAGa- -3'
miRNA:   3'- uaGUGgC-CGGCGCAGau-------GCACGUCac -5'
10733 5' -57.9 NC_002794.1 + 134420 0.66 0.850902
Target:  5'- -gCGCCGGCguUGUGUCcccacaucaguaACGUGCGGUGc -3'
miRNA:   3'- uaGUGGCCG--GCGCAGa-----------UGCACGUCAC- -5'
10733 5' -57.9 NC_002794.1 + 143281 0.67 0.844664
Target:  5'- -gCGCCGGCCGCucgggGUCgggcGgGUGCAGc- -3'
miRNA:   3'- uaGUGGCCGGCG-----CAGa---UgCACGUCac -5'
10733 5' -57.9 NC_002794.1 + 55864 0.67 0.820245
Target:  5'- --uGCgGGCCGCGaUCUGCGcGCccAGUGc -3'
miRNA:   3'- uagUGgCCGGCGC-AGAUGCaCG--UCAC- -5'
10733 5' -57.9 NC_002794.1 + 178420 0.67 0.811768
Target:  5'- uGUCGCaCGGaCCGCG-CgACGgGCGGUGa -3'
miRNA:   3'- -UAGUG-GCC-GGCGCaGaUGCaCGUCAC- -5'
10733 5' -57.9 NC_002794.1 + 142168 0.67 0.808333
Target:  5'- -gCACCGGCaGCGUCggcagcgcgaggaGCG-GCAGUGc -3'
miRNA:   3'- uaGUGGCCGgCGCAGa------------UGCaCGUCAC- -5'
10733 5' -57.9 NC_002794.1 + 180680 0.67 0.803135
Target:  5'- cUCGCCGGCCGC-UCccgGCGcccgGCGGg- -3'
miRNA:   3'- uAGUGGCCGGCGcAGa--UGCa---CGUCac -5'
10733 5' -57.9 NC_002794.1 + 47962 0.68 0.797003
Target:  5'- -gCGCCGGCugggcgaccgccgCGCG-CUccuccgacccgacgaGCGUGCAGUGg -3'
miRNA:   3'- uaGUGGCCG-------------GCGCaGA---------------UGCACGUCAC- -5'
10733 5' -57.9 NC_002794.1 + 115391 0.68 0.785433
Target:  5'- -cCGCCGGCC-CGUgCUGCGgacucCAGUGg -3'
miRNA:   3'- uaGUGGCCGGcGCA-GAUGCac---GUCAC- -5'
10733 5' -57.9 NC_002794.1 + 150852 0.68 0.774554
Target:  5'- -gCGgCGGCCGCGUCUACGccuauagccggcGCAGc- -3'
miRNA:   3'- uaGUgGCCGGCGCAGAUGCa-----------CGUCac -5'
10733 5' -57.9 NC_002794.1 + 37865 0.68 0.767204
Target:  5'- cUCuCCGGUCgGCGUCUcgggcgGCGgggGCGGUGg -3'
miRNA:   3'- uAGuGGCCGG-CGCAGA------UGCa--CGUCAC- -5'
10733 5' -57.9 NC_002794.1 + 71222 0.69 0.739019
Target:  5'- gGUC-CCGGCCGCGUagugGCGgccgGC-GUGg -3'
miRNA:   3'- -UAGuGGCCGGCGCAga--UGCa---CGuCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.