miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 3' -55.4 NC_002794.1 + 126100 0.66 0.951348
Target:  5'- cGACUGGCuuccGGCCcugggcgccgcgcucGUCUGCgccgGUUUCUGg -3'
miRNA:   3'- -CUGGCCGu---CUGG---------------CAGAUGa---CAGAGAC- -5'
10734 3' -55.4 NC_002794.1 + 117367 0.66 0.940975
Target:  5'- gGAgCGGCGGGCCGcCUGCacgGUCg--- -3'
miRNA:   3'- -CUgGCCGUCUGGCaGAUGa--CAGagac -5'
10734 3' -55.4 NC_002794.1 + 150178 0.67 0.931313
Target:  5'- aGACCGGCAGACCuUCgUGgUGgggcCUCa- -3'
miRNA:   3'- -CUGGCCGUCUGGcAG-AUgACa---GAGac -5'
10734 3' -55.4 NC_002794.1 + 194215 0.67 0.920718
Target:  5'- cACCGGCGGGCCGUUcagguaGUCcgUCUGa -3'
miRNA:   3'- cUGGCCGUCUGGCAGauga--CAG--AGAC- -5'
10734 3' -55.4 NC_002794.1 + 185644 0.67 0.909188
Target:  5'- cGAgCGGCggaaAGACCGUUUAUUGUCg--- -3'
miRNA:   3'- -CUgGCCG----UCUGGCAGAUGACAGagac -5'
10734 3' -55.4 NC_002794.1 + 85062 0.67 0.909188
Target:  5'- cGACCGGCcacGCCGcgUCUGCgcccccgGUCUCUc -3'
miRNA:   3'- -CUGGCCGuc-UGGC--AGAUGa------CAGAGAc -5'
10734 3' -55.4 NC_002794.1 + 91233 0.67 0.909188
Target:  5'- cGGCgCGGCGG-CCGUCggGCUGcgCUCg- -3'
miRNA:   3'- -CUG-GCCGUCuGGCAGa-UGACa-GAGac -5'
10734 3' -55.4 NC_002794.1 + 60101 0.68 0.88338
Target:  5'- cGGCCaGCuGGCCGUCUGCgagGUCa--- -3'
miRNA:   3'- -CUGGcCGuCUGGCAGAUGa--CAGagac -5'
10734 3' -55.4 NC_002794.1 + 138099 0.68 0.869153
Target:  5'- --gCGGCGGACCGUCUGCaggagggcgUGgugCUCg- -3'
miRNA:   3'- cugGCCGUCUGGCAGAUG---------ACa--GAGac -5'
10734 3' -55.4 NC_002794.1 + 192011 0.71 0.768136
Target:  5'- --gCGGCGGugGCCGcggCUGCUGUUUCUGu -3'
miRNA:   3'- cugGCCGUC--UGGCa--GAUGACAGAGAC- -5'
10734 3' -55.4 NC_002794.1 + 105443 0.71 0.768136
Target:  5'- cGCCGGCGGcGCCGUCguuCUGcccgUUCUGg -3'
miRNA:   3'- cUGGCCGUC-UGGCAGau-GACa---GAGAC- -5'
10734 3' -55.4 NC_002794.1 + 150541 0.72 0.71035
Target:  5'- gGGCCGGCGccauGGCCGUCUcggcGCUGgagCUCa- -3'
miRNA:   3'- -CUGGCCGU----CUGGCAGA----UGACa--GAGac -5'
10734 3' -55.4 NC_002794.1 + 113545 0.76 0.488627
Target:  5'- cGCCGGCccggagcaggcgccGGACCGUCUGC-GUCUCg- -3'
miRNA:   3'- cUGGCCG--------------UCUGGCAGAUGaCAGAGac -5'
10734 3' -55.4 NC_002794.1 + 149932 1.08 0.004887
Target:  5'- cGACCGGCAGACCGUCUACUGUCUCUGu -3'
miRNA:   3'- -CUGGCCGUCUGGCAGAUGACAGAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.