miRNA display CGI


Results 1 - 20 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 113147 0.65 0.614568
Target:  5'- gGGCgGGCgCgucagcguguagcGCgCGCGGGCggCGGCGGUCg -3'
miRNA:   3'- -CCGgCUG-Ga------------CG-GCGCCUG--GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 21937 0.66 0.608975
Target:  5'- cGGCgCGGCgCUcGUCGaaGGCCGuCGGCCg -3'
miRNA:   3'- -CCG-GCUG-GA-CGGCgcCUGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 53613 0.66 0.608975
Target:  5'- gGGCCG-CCgcagcGUCGgaCGGACgaGGuCGGCCg -3'
miRNA:   3'- -CCGGCuGGa----CGGC--GCCUGg-CC-GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 104621 0.66 0.608975
Target:  5'- aGCuCGGCCagcagcucguUGUCGCGcGCCGaGCaGGCCa -3'
miRNA:   3'- cCG-GCUGG----------ACGGCGCcUGGC-CG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 102888 0.66 0.608975
Target:  5'- uGGCCGACCuggUGCCcaaGCGGGucuacCUGGgGGaCg -3'
miRNA:   3'- -CCGGCUGG---ACGG---CGCCU-----GGCCgCCgG- -5'
10734 5' -65.5 NC_002794.1 + 84436 0.66 0.608975
Target:  5'- cGG-CGACgUGCCGaacgaGGGCCuGCcGCCg -3'
miRNA:   3'- -CCgGCUGgACGGCg----CCUGGcCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 194311 0.66 0.608975
Target:  5'- cGCCagcGCCUGCCgcaGCGGAUCGcGCcacgGGCUc -3'
miRNA:   3'- cCGGc--UGGACGG---CGCCUGGC-CG----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 105960 0.66 0.608044
Target:  5'- cGGCUgggGGCC-GCCGCGGAcgaguuuCCGGUcGCg -3'
miRNA:   3'- -CCGG---CUGGaCGGCGCCU-------GGCCGcCGg -5'
10734 5' -65.5 NC_002794.1 + 63417 0.66 0.608044
Target:  5'- cGGCCGGacggacgaugagcgcCCgacaccaccacgGCCGCGGcggcgacgaugacgACgaggCGGCGGCCg -3'
miRNA:   3'- -CCGGCU---------------GGa-----------CGGCGCC--------------UG----GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 32798 0.66 0.603388
Target:  5'- cGGUCGGuCUUcGCCGCGaccgucgucuucgucGGCCucGCGGCCg -3'
miRNA:   3'- -CCGGCU-GGA-CGGCGC---------------CUGGc-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 58674 0.66 0.603388
Target:  5'- cGGCCGugcacgcgcacuaccGCCaGCUGCucGGGCUGGUGcGCUu -3'
miRNA:   3'- -CCGGC---------------UGGaCGGCG--CCUGGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 58928 0.66 0.599667
Target:  5'- uGCCGcGCCUGCaCGCcauGGACgaGGaCGaGCCg -3'
miRNA:   3'- cCGGC-UGGACG-GCG---CCUGg-CC-GC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 104797 0.66 0.599667
Target:  5'- aGGCgGugCUGCuuCGCGauGGCCaGGuCGGUCa -3'
miRNA:   3'- -CCGgCugGACG--GCGC--CUGG-CC-GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 180744 0.66 0.599667
Target:  5'- cGCCGuCCgGCUccucgGCGGcuUCGGCGGCa -3'
miRNA:   3'- cCGGCuGGaCGG-----CGCCu-GGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 144831 0.66 0.599667
Target:  5'- cGCgGACgaGCCGCuGGAgCGG-GuGCCg -3'
miRNA:   3'- cCGgCUGgaCGGCG-CCUgGCCgC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 138163 0.66 0.599667
Target:  5'- aGCCGGCauuUGaCGCucuuGACCucGGCGGCCa -3'
miRNA:   3'- cCGGCUGg--ACgGCGc---CUGG--CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 86959 0.66 0.596878
Target:  5'- cGUCGACgUccGCUGCGGcgagcugcgacgagGuCCGGCGGCUu -3'
miRNA:   3'- cCGGCUGgA--CGGCGCC--------------U-GGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 127520 0.66 0.594091
Target:  5'- gGGCUGugCcGCCGCGauccuGCUGGCgcuguuggucaugcuGGCCc -3'
miRNA:   3'- -CCGGCugGaCGGCGCc----UGGCCG---------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 105701 0.66 0.590379
Target:  5'- cGCCGucGCCU-CCGCucgaGGCgaucgCGGCGGCCg -3'
miRNA:   3'- cCGGC--UGGAcGGCGc---CUG-----GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 185411 0.66 0.590379
Target:  5'- gGGcCCGACC-GCCGUcGACuCGacGCGGCg -3'
miRNA:   3'- -CC-GGCUGGaCGGCGcCUG-GC--CGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.