miRNA display CGI


Results 41 - 60 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 21937 0.66 0.608975
Target:  5'- cGGCgCGGCgCUcGUCGaaGGCCGuCGGCCg -3'
miRNA:   3'- -CCG-GCUG-GA-CGGCgcCUGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 53613 0.66 0.608975
Target:  5'- gGGCCG-CCgcagcGUCGgaCGGACgaGGuCGGCCg -3'
miRNA:   3'- -CCGGCuGGa----CGGC--GCCUGg-CC-GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 104621 0.66 0.608975
Target:  5'- aGCuCGGCCagcagcucguUGUCGCGcGCCGaGCaGGCCa -3'
miRNA:   3'- cCG-GCUGG----------ACGGCGCcUGGC-CG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 102888 0.66 0.608975
Target:  5'- uGGCCGACCuggUGCCcaaGCGGGucuacCUGGgGGaCg -3'
miRNA:   3'- -CCGGCUGG---ACGG---CGCCU-----GGCCgCCgG- -5'
10734 5' -65.5 NC_002794.1 + 84436 0.66 0.608975
Target:  5'- cGG-CGACgUGCCGaacgaGGGCCuGCcGCCg -3'
miRNA:   3'- -CCgGCUGgACGGCg----CCUGGcCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 58928 0.66 0.599667
Target:  5'- uGCCGcGCCUGCaCGCcauGGACgaGGaCGaGCCg -3'
miRNA:   3'- cCGGC-UGGACG-GCG---CCUGg-CC-GC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 86959 0.66 0.596878
Target:  5'- cGUCGACgUccGCUGCGGcgagcugcgacgagGuCCGGCGGCUu -3'
miRNA:   3'- cCGGCUGgA--CGGCGCC--------------U-GGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 125325 0.66 0.590379
Target:  5'- cGCCGAgCCggagcgcGCCaCGGcgcACCGGCaGCCg -3'
miRNA:   3'- cCGGCU-GGa------CGGcGCC---UGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 62401 0.66 0.590379
Target:  5'- -aCUGACC-GCCuCGGACCuGCGGUg -3'
miRNA:   3'- ccGGCUGGaCGGcGCCUGGcCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 50625 0.66 0.590379
Target:  5'- aGCUG-CUUGCC-CGu-CCGGCGGUCg -3'
miRNA:   3'- cCGGCuGGACGGcGCcuGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 180004 0.66 0.590379
Target:  5'- cGGCgGGCCcgGCCaCGacgacGGCC-GCGGCCg -3'
miRNA:   3'- -CCGgCUGGa-CGGcGC-----CUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 186021 0.66 0.590379
Target:  5'- gGGCCcgGGCCcgGaCC-CGGGCCccGGCuGGCCg -3'
miRNA:   3'- -CCGG--CUGGa-C-GGcGCCUGG--CCG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 26656 0.66 0.590379
Target:  5'- cGGCCGGCUcGUCgGCGGGgUGGaGcGCCa -3'
miRNA:   3'- -CCGGCUGGaCGG-CGCCUgGCCgC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 65926 0.66 0.590379
Target:  5'- cGCCGGCg-GCgGUGGcguCGGCGGCg -3'
miRNA:   3'- cCGGCUGgaCGgCGCCug-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 190007 0.66 0.590379
Target:  5'- -aUCGGCCcGUC-CGGGuccaUCGGCGGCCg -3'
miRNA:   3'- ccGGCUGGaCGGcGCCU----GGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 96323 0.66 0.590379
Target:  5'- cGCCGGCaugCUGCCGCaucucaaggaGGAuCUGGUccgccuGGCCg -3'
miRNA:   3'- cCGGCUG---GACGGCG----------CCU-GGCCG------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 185411 0.66 0.590379
Target:  5'- gGGcCCGACC-GCCGUcGACuCGacGCGGCg -3'
miRNA:   3'- -CC-GGCUGGaCGGCGcCUG-GC--CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 105701 0.66 0.590379
Target:  5'- cGCCGucGCCU-CCGCucgaGGCgaucgCGGCGGCCg -3'
miRNA:   3'- cCGGC--UGGAcGGCGc---CUG-----GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 127520 0.66 0.594091
Target:  5'- gGGCUGugCcGCCGCGauccuGCUGGCgcuguuggucaugcuGGCCc -3'
miRNA:   3'- -CCGGCugGaCGGCGCc----UGGCCG---------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 80625 0.66 0.590379
Target:  5'- uGCCGGCCgaGCaccuCGC-GACCGGCGaCCc -3'
miRNA:   3'- cCGGCUGGa-CG----GCGcCUGGCCGCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.