miRNA display CGI


Results 81 - 100 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 62401 0.66 0.590379
Target:  5'- -aCUGACC-GCCuCGGACCuGCGGUg -3'
miRNA:   3'- ccGGCUGGaCGGcGCCUGGcCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 125325 0.66 0.590379
Target:  5'- cGCCGAgCCggagcgcGCCaCGGcgcACCGGCaGCCg -3'
miRNA:   3'- cCGGCU-GGa------CGGcGCC---UGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 139900 0.66 0.590379
Target:  5'- uGCgGGCCaGCCGCaGGCCgucGGaCGGCa -3'
miRNA:   3'- cCGgCUGGaCGGCGcCUGG---CC-GCCGg -5'
10734 5' -65.5 NC_002794.1 + 128265 0.67 0.553529
Target:  5'- cGGUCGggGCCgagCGCGGAgCCGaCGGCCg -3'
miRNA:   3'- -CCGGC--UGGacgGCGCCU-GGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 20979 0.67 0.553529
Target:  5'- -aCCGGCagcgGCgGCGGcagcgACCgcGGCGGCCa -3'
miRNA:   3'- ccGGCUGga--CGgCGCC-----UGG--CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 23962 0.67 0.553529
Target:  5'- uGGCUccgaGCCaGCgGCGaGGCCGGC-GCCa -3'
miRNA:   3'- -CCGGc---UGGaCGgCGC-CUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 11536 0.67 0.553529
Target:  5'- cGGgCGACCgagGaCCGCGG-CUGGUcGCUa -3'
miRNA:   3'- -CCgGCUGGa--C-GGCGCCuGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 113924 0.67 0.553529
Target:  5'- aGGUCGGCC-GCCGaggcgaCGGGCC-GCuGCCg -3'
miRNA:   3'- -CCGGCUGGaCGGC------GCCUGGcCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 36919 0.67 0.55079
Target:  5'- cGCCGGCCccgcGaCCGCGGAggagaaaguccgcgUCGcGCGGCg -3'
miRNA:   3'- cCGGCUGGa---C-GGCGCCU--------------GGC-CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 118189 0.67 0.544417
Target:  5'- cGCCGACCUuccgucgccGCCGCcGucgccuCgCGGaCGGCCa -3'
miRNA:   3'- cCGGCUGGA---------CGGCGcCu-----G-GCC-GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 192385 0.67 0.553529
Target:  5'- gGGCUGACCgccaccgccgcGCCGgGGuagucgaaacGCCGcgacggguccGCGGCCg -3'
miRNA:   3'- -CCGGCUGGa----------CGGCgCC----------UGGC----------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 182809 0.67 0.553529
Target:  5'- cGGUCGAcagcucguCCaGCCGCGGcACCGacacgaccaccaGCGuGCCg -3'
miRNA:   3'- -CCGGCU--------GGaCGGCGCC-UGGC------------CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 69748 0.67 0.553529
Target:  5'- cGGCCGGCgacGCCGCGGGgaUGGCGa-- -3'
miRNA:   3'- -CCGGCUGga-CGGCGCCUg-GCCGCcgg -5'
10734 5' -65.5 NC_002794.1 + 106983 0.67 0.553529
Target:  5'- cGGCCGGCacgGCgGUGG--CGGCgcuGGCCg -3'
miRNA:   3'- -CCGGCUGga-CGgCGCCugGCCG---CCGG- -5'
10734 5' -65.5 NC_002794.1 + 123362 0.67 0.553529
Target:  5'- cGGCCGcUCUG-CGUGGGCUacaGCGGUCu -3'
miRNA:   3'- -CCGGCuGGACgGCGCCUGGc--CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 58012 0.67 0.553529
Target:  5'- cGCCG-CCgggGCCGCc-GCCGGCGaacccGCCg -3'
miRNA:   3'- cCGGCuGGa--CGGCGccUGGCCGC-----CGG- -5'
10734 5' -65.5 NC_002794.1 + 44511 0.67 0.556271
Target:  5'- cGGCCcaGACCgggcccgUGuCCGCGaGcgcgccgucgucgucGCCGGCGGCg -3'
miRNA:   3'- -CCGG--CUGG-------AC-GGCGC-C---------------UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 127340 0.67 0.553529
Target:  5'- cGCCGcuGCCgagacGCuCGCGGcgGCgGcGCGGCCg -3'
miRNA:   3'- cCGGC--UGGa----CG-GCGCC--UGgC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 82657 0.67 0.557186
Target:  5'- cGCCGcgcucgacGCCgcGCCgGCGGAucgcacgccguucgcCCGGCGcGCCg -3'
miRNA:   3'- cCGGC--------UGGa-CGG-CGCCU---------------GGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 189901 0.67 0.544417
Target:  5'- cGCCGucagcGCC-GCCGCGcGACCGcccgcucgcccGaCGGCCg -3'
miRNA:   3'- cCGGC-----UGGaCGGCGC-CUGGC-----------C-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.