miRNA display CGI


Results 21 - 40 of 469 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 119516 0.78 0.121688
Target:  5'- cGGCgCGgaGCCgGCCGCGGACCccucguccGCGGCCg -3'
miRNA:   3'- -CCG-GC--UGGaCGGCGCCUGGc-------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 56573 0.77 0.124612
Target:  5'- cGCCGACCgcccgcGCCGCGGcgcccGCCGcCGGCCu -3'
miRNA:   3'- cCGGCUGGa-----CGGCGCC-----UGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 80424 0.77 0.130656
Target:  5'- cGCCGGgCgggGCCGCc-GCCGGCGGCCg -3'
miRNA:   3'- cCGGCUgGa--CGGCGccUGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 54978 0.77 0.130656
Target:  5'- uGCaCGACCcGCCGCGGcgaCGGCGGCg -3'
miRNA:   3'- cCG-GCUGGaCGGCGCCug-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 86022 0.77 0.133463
Target:  5'- cGCCGACCgUGCgGCGGACaGGCcucaucgGGCCg -3'
miRNA:   3'- cCGGCUGG-ACGgCGCCUGgCCG-------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 86822 0.77 0.133778
Target:  5'- gGGCCgcGACCUcGCCGggauCGGGUCGGCGGCCc -3'
miRNA:   3'- -CCGG--CUGGA-CGGC----GCCUGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 101579 0.77 0.133778
Target:  5'- uGCCGGCC-GCCGCGG-CCGGgggggcgggugcCGGCCc -3'
miRNA:   3'- cCGGCUGGaCGGCGCCuGGCC------------GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 62058 0.77 0.133778
Target:  5'- uGGCCGAC--GCCgGCGGcgacGCCGGCGGCg -3'
miRNA:   3'- -CCGGCUGgaCGG-CGCC----UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 34063 0.77 0.136969
Target:  5'- cGCaCGACCcGCCGUucccGCCGGCGGCCg -3'
miRNA:   3'- cCG-GCUGGaCGGCGcc--UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 130661 0.77 0.136969
Target:  5'- cGCCG-CCgGCCGCGGGCUccgccGCGGCCu -3'
miRNA:   3'- cCGGCuGGaCGGCGCCUGGc----CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 61536 0.77 0.139901
Target:  5'- cGGCCGccgcgaagacgacGCC-GCCGCGG--CGGCGGCCg -3'
miRNA:   3'- -CCGGC-------------UGGaCGGCGCCugGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 147196 0.76 0.143562
Target:  5'- uGGuuGAacuCUUGCCGuCGGGCCGG-GGCCg -3'
miRNA:   3'- -CCggCU---GGACGGC-GCCUGGCCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 121808 0.76 0.150443
Target:  5'- cGGCCGgcGCCUGCCGCugcaGGAUCGcuacgaCGGCCa -3'
miRNA:   3'- -CCGGC--UGGACGGCG----CCUGGCc-----GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 76529 0.76 0.150443
Target:  5'- aGGCC-ACCgGCCGCGGcGCCGacGCGGUCg -3'
miRNA:   3'- -CCGGcUGGaCGGCGCC-UGGC--CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 38425 0.76 0.151855
Target:  5'- cGCCGACUccaugGCgGCGGGCCGgacugaggagccggcGCGGCCg -3'
miRNA:   3'- cCGGCUGGa----CGgCGCCUGGC---------------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 18728 0.76 0.151855
Target:  5'- aGCCGACgaGCCGCcccaacgccacgacGGCCGGCGGCa -3'
miRNA:   3'- cCGGCUGgaCGGCGc-------------CUGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 53510 0.76 0.152566
Target:  5'- gGGUCGcCCaguagauggagaaGCCGUGGGCgCGGCGGCCg -3'
miRNA:   3'- -CCGGCuGGa------------CGGCGCCUG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 53745 0.76 0.153995
Target:  5'- cGGCCGcCgCUGCCGCcGccgcuGCCGGCGGCg -3'
miRNA:   3'- -CCGGCuG-GACGGCGcC-----UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 192961 0.76 0.153995
Target:  5'- aGGCCGACgaGCCGUgcaGGACCagggcGCGGUCg -3'
miRNA:   3'- -CCGGCUGgaCGGCG---CCUGGc----CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 152412 0.76 0.157623
Target:  5'- cGCCGACCUGCUGCcccGGGCCGucuguCGGCa -3'
miRNA:   3'- cCGGCUGGACGGCG---CCUGGCc----GCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.