miRNA display CGI


Results 41 - 60 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 107525 0.76 0.157623
Target:  5'- cGCCGACg-GCCggcGCGGcGCCGGCGGCg -3'
miRNA:   3'- cCGGCUGgaCGG---CGCC-UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 115939 0.76 0.161328
Target:  5'- gGGCCGGCCcGCCGCGuGucGCCGG-GGaCCg -3'
miRNA:   3'- -CCGGCUGGaCGGCGC-C--UGGCCgCC-GG- -5'
10734 5' -65.5 NC_002794.1 + 1627 0.76 0.161328
Target:  5'- -aCCGGCCUGauaCGgGGACCGGgGGCg -3'
miRNA:   3'- ccGGCUGGACg--GCgCCUGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 1690 0.76 0.161328
Target:  5'- -aCCGGCCUGauaCGgGGACCGGgGGCg -3'
miRNA:   3'- ccGGCUGGACg--GCgCCUGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 31039 0.75 0.168975
Target:  5'- gGGCCGACagauaggGCaGCGG-CaCGGCGGCCa -3'
miRNA:   3'- -CCGGCUGga-----CGgCGCCuG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 118261 0.75 0.168975
Target:  5'- aGGUCGGCCgggGCgGCGGcGCCGGCGucggggaccgcGCCg -3'
miRNA:   3'- -CCGGCUGGa--CGgCGCC-UGGCCGC-----------CGG- -5'
10734 5' -65.5 NC_002794.1 + 92060 0.75 0.172918
Target:  5'- -uCCGGCgUGCCGCGG-CCGGUGcuGCCa -3'
miRNA:   3'- ccGGCUGgACGGCGCCuGGCCGC--CGG- -5'
10734 5' -65.5 NC_002794.1 + 182992 0.75 0.172918
Target:  5'- cGGCCGGCgCUucGCCGCGGGcgccCCGcGCGcGCCc -3'
miRNA:   3'- -CCGGCUG-GA--CGGCGCCU----GGC-CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 19255 0.75 0.172918
Target:  5'- uGCCGACCgGCCGCGGcCCccguGGCGcGUCu -3'
miRNA:   3'- cCGGCUGGaCGGCGCCuGG----CCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 138416 0.75 0.175323
Target:  5'- cGCCGGCCgccgacucgucgaGCCGCGGuGgCGGCGGCg -3'
miRNA:   3'- cCGGCUGGa------------CGGCGCC-UgGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 142021 0.75 0.176944
Target:  5'- uGCCGgaggugcuucGCCUGUCGCGGgaccguACCGGCGGUUc -3'
miRNA:   3'- cCGGC----------UGGACGGCGCC------UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 68093 0.75 0.176944
Target:  5'- cGGCUGACCUGCCu--GACCGuguugaaccGCGGCCu -3'
miRNA:   3'- -CCGGCUGGACGGcgcCUGGC---------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 94484 0.75 0.176944
Target:  5'- cGGCgGACgCgGCCGCGGGCCguGGCGGg- -3'
miRNA:   3'- -CCGgCUG-GaCGGCGCCUGG--CCGCCgg -5'
10734 5' -65.5 NC_002794.1 + 124013 0.75 0.176944
Target:  5'- aGCgGGCg-GCCGCGGAagagaCGGUGGCCg -3'
miRNA:   3'- cCGgCUGgaCGGCGCCUg----GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 111633 0.75 0.176944
Target:  5'- cGGCCGccGCCggucgggcGCCGCGG-CC-GCGGCCa -3'
miRNA:   3'- -CCGGC--UGGa-------CGGCGCCuGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 12399 0.75 0.181052
Target:  5'- uGGCCGACaaccGCaCGCGGACgGcGCGcGCCg -3'
miRNA:   3'- -CCGGCUGga--CG-GCGCCUGgC-CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 105431 0.75 0.185245
Target:  5'- uGGCCG-CC-GCCGC--GCCGGCGGCg -3'
miRNA:   3'- -CCGGCuGGaCGGCGccUGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 116119 0.75 0.189091
Target:  5'- aGGUCGAguCC-GCCGCGGcggcggcGgCGGCGGCCa -3'
miRNA:   3'- -CCGGCU--GGaCGGCGCC-------UgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 67028 0.75 0.189523
Target:  5'- cGGCCGGCUcccgccgcGUCGCGGAcCCGGCGuCCg -3'
miRNA:   3'- -CCGGCUGGa-------CGGCGCCU-GGCCGCcGG- -5'
10734 5' -65.5 NC_002794.1 + 14578 0.75 0.189523
Target:  5'- cGGCCGACC-GaaGCGGGCCGuggcgaGCGcGCCg -3'
miRNA:   3'- -CCGGCUGGaCggCGCCUGGC------CGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.