miRNA display CGI


Results 61 - 80 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 67028 0.75 0.189523
Target:  5'- cGGCCGGCUcccgccgcGUCGCGGAcCCGGCGuCCg -3'
miRNA:   3'- -CCGGCUGGa-------CGGCGCCU-GGCCGCcGG- -5'
10734 5' -65.5 NC_002794.1 + 57577 0.74 0.193888
Target:  5'- uGGCCGACUUcgagucacagGCCGCGcgcguGGCCaccgagaaGGCGGCCg -3'
miRNA:   3'- -CCGGCUGGA----------CGGCGC-----CUGG--------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 70858 0.74 0.193888
Target:  5'- uGCCGGCCUccuccgGCgGCGGcAgCGGCGGCUc -3'
miRNA:   3'- cCGGCUGGA------CGgCGCC-UgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 185453 0.74 0.193888
Target:  5'- aGGUcuccgCGACaaacGCCGCGGG-CGGCGGCCg -3'
miRNA:   3'- -CCG-----GCUGga--CGGCGCCUgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 42575 0.74 0.193888
Target:  5'- cGGCgGACCcGCgGacggaggaGGGCgCGGCGGCCg -3'
miRNA:   3'- -CCGgCUGGaCGgCg-------CCUG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 112340 0.74 0.198341
Target:  5'- cGCCGGCCgGCgGC--GCCGGCGGCg -3'
miRNA:   3'- cCGGCUGGaCGgCGccUGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 41221 0.74 0.198791
Target:  5'- cGGCCu-CCggggauuccucccacGCCGCGGccgccgacGCCGGCGGCCc -3'
miRNA:   3'- -CCGGcuGGa--------------CGGCGCC--------UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 32293 0.74 0.202424
Target:  5'- cGCCG-CCgccGCCGCGGcggccgcGCCGGCcgcGGCCg -3'
miRNA:   3'- cCGGCuGGa--CGGCGCC-------UGGCCG---CCGG- -5'
10734 5' -65.5 NC_002794.1 + 32589 0.74 0.202882
Target:  5'- uGCCGggGCCgggGCCG-GGGCCGG-GGCCg -3'
miRNA:   3'- cCGGC--UGGa--CGGCgCCUGGCCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 12195 0.74 0.202882
Target:  5'- cGGCCGGgC-GCCGCucGGacguGCCGGCGGCg -3'
miRNA:   3'- -CCGGCUgGaCGGCG--CC----UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 151594 0.74 0.202882
Target:  5'- cGCCG-CC-GCCGCGGGCCcGCGGUUc -3'
miRNA:   3'- cCGGCuGGaCGGCGCCUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 180899 0.74 0.202882
Target:  5'- cGGCCgcgGACUcgGCCGCGGucucGCCGGC-GCCg -3'
miRNA:   3'- -CCGG---CUGGa-CGGCGCC----UGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 101012 0.74 0.207046
Target:  5'- gGGCCuuCCUGUcgggggaCGCGGGCCGGgcgcggguCGGCCg -3'
miRNA:   3'- -CCGGcuGGACG-------GCGCCUGGCC--------GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 102705 0.74 0.207514
Target:  5'- --aCGGCCggGCCGcCGGACgGGCGcGCCa -3'
miRNA:   3'- ccgGCUGGa-CGGC-GCCUGgCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 150165 0.74 0.209392
Target:  5'- cGGCCGGCUUGCCa--GACCGGCagaccuucgugguggGGCCu -3'
miRNA:   3'- -CCGGCUGGACGGcgcCUGGCCG---------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 181383 0.74 0.212236
Target:  5'- gGGcCCGGCCgucaguucGCC-CGGGCCGGCcGCCg -3'
miRNA:   3'- -CC-GGCUGGa-------CGGcGCCUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 40518 0.74 0.217051
Target:  5'- cGGCCG-CCgacgcGCCGaCGGgagacgaggggGCCGGCGGCa -3'
miRNA:   3'- -CCGGCuGGa----CGGC-GCC-----------UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 32862 0.74 0.217051
Target:  5'- cGGCCGAgCCggcggGCgGCGGcGgCGGCGGCg -3'
miRNA:   3'- -CCGGCU-GGa----CGgCGCC-UgGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 107167 0.74 0.217051
Target:  5'- gGGCCG-CCgcuacGCgGCGGAgCCGGCGccGCCg -3'
miRNA:   3'- -CCGGCuGGa----CGgCGCCU-GGCCGC--CGG- -5'
10734 5' -65.5 NC_002794.1 + 22923 0.74 0.217537
Target:  5'- cGGCCGccaaACCggcacccaucggcugGCCGaCGGGCCGGC-GCCg -3'
miRNA:   3'- -CCGGC----UGGa--------------CGGC-GCCUGGCCGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.