miRNA display CGI


Results 81 - 100 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 189649 0.74 0.221959
Target:  5'- uGGCUGACUaGCCgGCuGGCCGaGCGGUCg -3'
miRNA:   3'- -CCGGCUGGaCGG-CGcCUGGC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 102529 0.74 0.221959
Target:  5'- gGGaCGACCUcuucucggGCCGCGuGGagaCGGCGGCCc -3'
miRNA:   3'- -CCgGCUGGA--------CGGCGC-CUg--GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 184549 0.74 0.221959
Target:  5'- cGCCGccucuucggacGCCUcacgcgccGCCGCGGcGgCGGCGGCCa -3'
miRNA:   3'- cCGGC-----------UGGA--------CGGCGCC-UgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 55196 0.73 0.226961
Target:  5'- cGGCCcuaacACCggcGCgGCGGagGCCGGCGGUCg -3'
miRNA:   3'- -CCGGc----UGGa--CGgCGCC--UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 146995 0.73 0.226961
Target:  5'- cGCCGGCCgacGUCgGCGG--CGGCGGCCg -3'
miRNA:   3'- cCGGCUGGa--CGG-CGCCugGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 181533 0.73 0.230519
Target:  5'- cGCCcGCC-GCCgGCGGGCCGGCgcucucggucgccgGGCCa -3'
miRNA:   3'- cCGGcUGGaCGG-CGCCUGGCCG--------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 34251 0.73 0.231544
Target:  5'- cGGCUG-CC-GCCgcagGCGGACCgcgcgcaGGCGGCCa -3'
miRNA:   3'- -CCGGCuGGaCGG----CGCCUGG-------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 68550 0.73 0.232058
Target:  5'- cGGCCGACaaGCUGCGGgugucGCCGaCGGCg -3'
miRNA:   3'- -CCGGCUGgaCGGCGCC-----UGGCcGCCGg -5'
10734 5' -65.5 NC_002794.1 + 93763 0.73 0.232058
Target:  5'- cGCCGACCUcUUGCGGacgcgcguGCUGGCGGCg -3'
miRNA:   3'- cCGGCUGGAcGGCGCC--------UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 192600 0.73 0.232058
Target:  5'- cGCCGACCacuucucuccGCCagguGCGGACagucgGGCGGCCg -3'
miRNA:   3'- cCGGCUGGa---------CGG----CGCCUGg----CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 117636 0.73 0.234123
Target:  5'- cGCCGACCgcgcgGCCcCGGACgaagagcgccacgcgCGGCGGCg -3'
miRNA:   3'- cCGGCUGGa----CGGcGCCUG---------------GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 154351 0.73 0.235683
Target:  5'- cGGCCGAgCUcccgcgcgguccagGCCGCGG--CGGCGGCg -3'
miRNA:   3'- -CCGGCUgGA--------------CGGCGCCugGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 66718 0.73 0.237251
Target:  5'- cGGCaCGGCC-GCCGCcaccGCCGGCGGUg -3'
miRNA:   3'- -CCG-GCUGGaCGGCGcc--UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 114349 0.73 0.237251
Target:  5'- cGGCuCGuCC-GCCGCcaGGGCCGGCugcagGGCCg -3'
miRNA:   3'- -CCG-GCuGGaCGGCG--CCUGGCCG-----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 107202 0.73 0.242541
Target:  5'- cGCCGGCCUcGCC-CGGcgccGCCgGGCGGCg -3'
miRNA:   3'- cCGGCUGGA-CGGcGCC----UGG-CCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 142133 0.73 0.242541
Target:  5'- cGGCCGACC-GCCgggucacgGCGGAggCGGCGGUa -3'
miRNA:   3'- -CCGGCUGGaCGG--------CGCCUg-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 10967 0.73 0.242541
Target:  5'- cGGCCGagacguccgauGCCUGCUccgaggccgcaaGUGGACCGugucccgcaccGCGGCCg -3'
miRNA:   3'- -CCGGC-----------UGGACGG------------CGCCUGGC-----------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 104415 0.73 0.246302
Target:  5'- cGGCCucGGCCUcgGCCGCcGGCCcggacgccgccgcgGGCGGCCc -3'
miRNA:   3'- -CCGG--CUGGA--CGGCGcCUGG--------------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 34038 0.73 0.247929
Target:  5'- aGCCG-CCUGCUGcCGGGCCGGC--CCg -3'
miRNA:   3'- cCGGCuGGACGGC-GCCUGGCCGccGG- -5'
10734 5' -65.5 NC_002794.1 + 59381 0.73 0.247929
Target:  5'- cGCCGcGCCUGCUGCGGGCCuacGCcuacGCCg -3'
miRNA:   3'- cCGGC-UGGACGGCGCCUGGc--CGc---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.