miRNA display CGI


Results 21 - 40 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 62401 0.66 0.590379
Target:  5'- -aCUGACC-GCCuCGGACCuGCGGUg -3'
miRNA:   3'- ccGGCUGGaCGGcGCCUGGcCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 125325 0.66 0.590379
Target:  5'- cGCCGAgCCggagcgcGCCaCGGcgcACCGGCaGCCg -3'
miRNA:   3'- cCGGCU-GGa------CGGcGCC---UGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 139900 0.66 0.590379
Target:  5'- uGCgGGCCaGCCGCaGGCCgucGGaCGGCa -3'
miRNA:   3'- cCGgCUGGaCGGCGcCUGG---CC-GCCGg -5'
10734 5' -65.5 NC_002794.1 + 186021 0.66 0.590379
Target:  5'- gGGCCcgGGCCcgGaCC-CGGGCCccGGCuGGCCg -3'
miRNA:   3'- -CCGG--CUGGa-C-GGcGCCUGG--CCG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 26656 0.66 0.590379
Target:  5'- cGGCCGGCUcGUCgGCGGGgUGGaGcGCCa -3'
miRNA:   3'- -CCGGCUGGaCGG-CGCCUgGCCgC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 65926 0.66 0.590379
Target:  5'- cGCCGGCg-GCgGUGGcguCGGCGGCg -3'
miRNA:   3'- cCGGCUGgaCGgCGCCug-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 80625 0.66 0.590379
Target:  5'- uGCCGGCCgaGCaccuCGC-GACCGGCGaCCc -3'
miRNA:   3'- cCGGCUGGa-CG----GCGcCUGGCCGCcGG- -5'
10734 5' -65.5 NC_002794.1 + 105701 0.66 0.590379
Target:  5'- cGCCGucGCCU-CCGCucgaGGCgaucgCGGCGGCCg -3'
miRNA:   3'- cCGGC--UGGAcGGCGc---CUG-----GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 185411 0.66 0.590379
Target:  5'- gGGcCCGACC-GCCGUcGACuCGacGCGGCg -3'
miRNA:   3'- -CC-GGCUGGaCGGCGcCUG-GC--CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 96323 0.66 0.590379
Target:  5'- cGCCGGCaugCUGCCGCaucucaaggaGGAuCUGGUccgccuGGCCg -3'
miRNA:   3'- cCGGCUG---GACGGCG----------CCU-GGCCG------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 190007 0.66 0.590379
Target:  5'- -aUCGGCCcGUC-CGGGuccaUCGGCGGCCg -3'
miRNA:   3'- ccGGCUGGaCGGcGCCU----GGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 52841 0.66 0.587597
Target:  5'- aGGCCGgucagcacguucGCCacgGCCGCGGccuuCCGGUacacccgaugguggGGUCg -3'
miRNA:   3'- -CCGGC------------UGGa--CGGCGCCu---GGCCG--------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 85429 0.66 0.58667
Target:  5'- cGcCCGACCcaagagcuucuggGCCGCGacaacaacauGGCCGGCgcccGGCCu -3'
miRNA:   3'- cC-GGCUGGa------------CGGCGC----------CUGGCCG----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 86378 0.66 0.584817
Target:  5'- gGGCCGAgccgggacggaugcuCCggGCCGCGcccGACCGGauguucCGGaCCg -3'
miRNA:   3'- -CCGGCU---------------GGa-CGGCGC---CUGGCC------GCC-GG- -5'
10734 5' -65.5 NC_002794.1 + 86546 0.66 0.584817
Target:  5'- gGGCCGAgccgggacggaugcuCCggGCCGCGcccGACCGGauuuucCGGaCCg -3'
miRNA:   3'- -CCGGCU---------------GGa-CGGCGC---CUGGCC------GCC-GG- -5'
10734 5' -65.5 NC_002794.1 + 86186 0.66 0.584817
Target:  5'- gGGCCGAgccgggacggaugcuCCggGCCGCGcccGACCGGauguucCGGaCCg -3'
miRNA:   3'- -CCGGCU---------------GGa-CGGCGC---CUGGCC------GCC-GG- -5'
10734 5' -65.5 NC_002794.1 + 40575 0.66 0.584817
Target:  5'- cGCCGuCCUgGCCGCGGGCCcucuccuccgagucGUcGCCg -3'
miRNA:   3'- cCGGCuGGA-CGGCGCCUGGc-------------CGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 193986 0.66 0.581115
Target:  5'- cGGCCGcuACC-GCCGCccccGGcuucGCCuucGCGGCCg -3'
miRNA:   3'- -CCGGC--UGGaCGGCG----CC----UGGc--CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 194449 0.66 0.581115
Target:  5'- cGGCCGcuCCUuaaaccaguaGCCGCGcuCCaGCGGCUc -3'
miRNA:   3'- -CCGGCu-GGA----------CGGCGCcuGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 194492 0.66 0.581115
Target:  5'- aGCCGccCCU-CCGCGcccGGCCcGCGGCCc -3'
miRNA:   3'- cCGGCu-GGAcGGCGC---CUGGcCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.