miRNA display CGI


Results 41 - 60 of 469 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 34345 0.66 0.581115
Target:  5'- cGGCCGcGCCguuCCGCccgcucuaccuGGACgacaacacggCGGUGGCCa -3'
miRNA:   3'- -CCGGC-UGGac-GGCG-----------CCUG----------GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 37490 0.66 0.581115
Target:  5'- cGGCgCGACCaGCCGCacGCgCGuGUGGUCg -3'
miRNA:   3'- -CCG-GCUGGaCGGCGccUG-GC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 115600 0.66 0.581115
Target:  5'- cGGUCGACCcGCuCGCccGGcGCCGGgaGGCg -3'
miRNA:   3'- -CCGGCUGGaCG-GCG--CC-UGGCCg-CCGg -5'
10734 5' -65.5 NC_002794.1 + 69122 0.66 0.581115
Target:  5'- cGGCau-CUcGCCGCcGACCGcCGGCCa -3'
miRNA:   3'- -CCGgcuGGaCGGCGcCUGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 154103 0.66 0.581115
Target:  5'- uGGCUuggGACCgcaaagucaCCG-GGAUCGGCGGCg -3'
miRNA:   3'- -CCGG---CUGGac-------GGCgCCUGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 194492 0.66 0.581115
Target:  5'- aGCCGccCCU-CCGCGcccGGCCcGCGGCCc -3'
miRNA:   3'- cCGGCu-GGAcGGCGC---CUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 194449 0.66 0.581115
Target:  5'- cGGCCGcuCCUuaaaccaguaGCCGCGcuCCaGCGGCUc -3'
miRNA:   3'- -CCGGCu-GGA----------CGGCGCcuGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 193986 0.66 0.581115
Target:  5'- cGGCCGcuACC-GCCGCccccGGcuucGCCuucGCGGCCg -3'
miRNA:   3'- -CCGGC--UGGaCGGCG----CC----UGGc--CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 80051 0.66 0.581115
Target:  5'- uGCCGGCgCgaGCCGCGGuACUuGGCccGCCa -3'
miRNA:   3'- cCGGCUG-Ga-CGGCGCC-UGG-CCGc-CGG- -5'
10734 5' -65.5 NC_002794.1 + 65159 0.66 0.580191
Target:  5'- cGCCGuCCcGuCCGUGGcgccgagACCGGCGgguGCCg -3'
miRNA:   3'- cCGGCuGGaC-GGCGCC-------UGGCCGC---CGG- -5'
10734 5' -65.5 NC_002794.1 + 138748 0.66 0.580191
Target:  5'- -cCCGGCCcuCCGgGGGCCgagucgcGGCGGUCg -3'
miRNA:   3'- ccGGCUGGacGGCgCCUGG-------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 17653 0.66 0.578342
Target:  5'- cGGCCGccgccaccgccgccACC-GCCGcCGGccCCGGCGGagaCCg -3'
miRNA:   3'- -CCGGC--------------UGGaCGGC-GCCu-GGCCGCC---GG- -5'
10734 5' -65.5 NC_002794.1 + 187211 0.66 0.571883
Target:  5'- -cCCGACCaucuCCaGCGGcuCCGGCuGGCCg -3'
miRNA:   3'- ccGGCUGGac--GG-CGCCu-GGCCG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 145437 0.66 0.571883
Target:  5'- cGGCUcACgaGCuCGCGaGCCGGCGGaCa -3'
miRNA:   3'- -CCGGcUGgaCG-GCGCcUGGCCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 109054 0.66 0.571883
Target:  5'- cGGgaGACCUG-UGCGGACCaggaagGGgGGUCa -3'
miRNA:   3'- -CCggCUGGACgGCGCCUGG------CCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 108532 0.66 0.571883
Target:  5'- cGGCCuGAUCgGCaGCGucaucgaacuGCCGGUGGCCu -3'
miRNA:   3'- -CCGG-CUGGaCGgCGCc---------UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 84750 0.66 0.571883
Target:  5'- cGCCacGACCgGCCGCgagaGGGCCGuccgaGGCCc -3'
miRNA:   3'- cCGG--CUGGaCGGCG----CCUGGCcg---CCGG- -5'
10734 5' -65.5 NC_002794.1 + 195466 0.66 0.571883
Target:  5'- cGCCccGCUUGCC-CGGacucgcccGCCGcGCGGCCu -3'
miRNA:   3'- cCGGc-UGGACGGcGCC--------UGGC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 46745 0.66 0.571883
Target:  5'- -aCCGACUUccGCCGCuGGAUCGaCGGCg -3'
miRNA:   3'- ccGGCUGGA--CGGCG-CCUGGCcGCCGg -5'
10734 5' -65.5 NC_002794.1 + 3844 0.66 0.571883
Target:  5'- aGGCgGGgCUugaGCCcCGGACCGGCauauaaGCCg -3'
miRNA:   3'- -CCGgCUgGA---CGGcGCCUGGCCGc-----CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.