miRNA display CGI


Results 61 - 80 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 109054 0.66 0.571883
Target:  5'- cGGgaGACCUG-UGCGGACCaggaagGGgGGUCa -3'
miRNA:   3'- -CCggCUGGACgGCGCCUGG------CCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 145437 0.66 0.571883
Target:  5'- cGGCUcACgaGCuCGCGaGCCGGCGGaCa -3'
miRNA:   3'- -CCGGcUGgaCG-GCGCcUGGCCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 187211 0.66 0.571883
Target:  5'- -cCCGACCaucuCCaGCGGcuCCGGCuGGCCg -3'
miRNA:   3'- ccGGCUGGac--GG-CGCCu-GGCCG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 86909 0.66 0.571883
Target:  5'- cGCCGACCcggugacGCCcgugGCGGGCaGGCGGg- -3'
miRNA:   3'- cCGGCUGGa------CGG----CGCCUGgCCGCCgg -5'
10734 5' -65.5 NC_002794.1 + 95864 0.66 0.570961
Target:  5'- gGGCgGGCCguuucagUGUgGCGacCCGGCGGCg -3'
miRNA:   3'- -CCGgCUGG-------ACGgCGCcuGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 49581 0.66 0.56912
Target:  5'- cGGUCGACCggaucCCGaucgcgaucggcgaCGGcgggcGCCGGCGGCg -3'
miRNA:   3'- -CCGGCUGGac---GGC--------------GCC-----UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 77023 0.66 0.56636
Target:  5'- cGGCgcaccuCGACCgcucguccccgcucgUGCCGCGGACC-GCGuCCc -3'
miRNA:   3'- -CCG------GCUGG---------------ACGGCGCCUGGcCGCcGG- -5'
10734 5' -65.5 NC_002794.1 + 18680 0.66 0.562686
Target:  5'- cGGCUG-CCgccGCCGUcuccGGCaCGGCGGCg -3'
miRNA:   3'- -CCGGCuGGa--CGGCGc---CUG-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 33689 0.66 0.562686
Target:  5'- cGCUGcGCCUGuUCGUGG-CgGGCGaGCCg -3'
miRNA:   3'- cCGGC-UGGAC-GGCGCCuGgCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 33574 0.66 0.562686
Target:  5'- -aUCGACCagGUgGUGGACCGccuGCGGCg -3'
miRNA:   3'- ccGGCUGGa-CGgCGCCUGGC---CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 58776 0.66 0.562686
Target:  5'- uGCUGGCCUacgucagcgcGCUGCacGACCGGC-GCCu -3'
miRNA:   3'- cCGGCUGGA----------CGGCGc-CUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 99539 0.66 0.562686
Target:  5'- -uCUGugCggGCCGCGGAaaCCGcGCGcGCCc -3'
miRNA:   3'- ccGGCugGa-CGGCGCCU--GGC-CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 98973 0.66 0.562686
Target:  5'- cGUCGGCggcGCCGUGGcCuCGGUGGUCg -3'
miRNA:   3'- cCGGCUGga-CGGCGCCuG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 126243 0.66 0.562686
Target:  5'- uGG-CGAUCgugGCgCGCGaGGUCGGCGGCUg -3'
miRNA:   3'- -CCgGCUGGa--CG-GCGC-CUGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 119436 0.66 0.562686
Target:  5'- aGGuCCGACg-GCgGCGGcGgUGGCGGCg -3'
miRNA:   3'- -CC-GGCUGgaCGgCGCC-UgGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 192024 0.66 0.562686
Target:  5'- cGGCUGcuguuUCUGUgGCGG--CGGCGGCUg -3'
miRNA:   3'- -CCGGCu----GGACGgCGCCugGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 89589 0.66 0.562686
Target:  5'- cGGCCGuCgaGCCGCGcGAucCCGGgucgguuuCGGCg -3'
miRNA:   3'- -CCGGCuGgaCGGCGC-CU--GGCC--------GCCGg -5'
10734 5' -65.5 NC_002794.1 + 78081 0.66 0.562686
Target:  5'- cGGCCGccgcccucGCCUccGUCGCGaaACgCGGCGGCg -3'
miRNA:   3'- -CCGGC--------UGGA--CGGCGCc-UG-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 57112 0.66 0.562686
Target:  5'- cGGCCGAC--GCCaUGGAgCG-CGGCCu -3'
miRNA:   3'- -CCGGCUGgaCGGcGCCUgGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 145914 0.66 0.562686
Target:  5'- aGUCGACCgcGCCGagcggagGGGCCGGCGagaGCg -3'
miRNA:   3'- cCGGCUGGa-CGGCg------CCUGGCCGC---CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.