miRNA display CGI


Results 1 - 20 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 111 0.68 0.482236
Target:  5'- cGGCCGACCgcacGaaaCGCcGACCGGa-GCCc -3'
miRNA:   3'- -CCGGCUGGa---Cg--GCGcCUGGCCgcCGG- -5'
10734 5' -65.5 NC_002794.1 + 260 0.73 0.252863
Target:  5'- uGCCG-CCgcGCgCGCGGACgcgaggaCGGCGGCCc -3'
miRNA:   3'- cCGGCuGGa-CG-GCGCCUG-------GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 880 0.79 0.100499
Target:  5'- cGGUCGGCgUGCgCGCGGGCCGG-GuGCCa -3'
miRNA:   3'- -CCGGCUGgACG-GCGCCUGGCCgC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 1281 0.68 0.490921
Target:  5'- -aCCGGCCUuCUaaGGACCGGCcgcuGGCCa -3'
miRNA:   3'- ccGGCUGGAcGGcgCCUGGCCG----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 1563 0.68 0.456644
Target:  5'- cGCCGGCCUuauaCGgGGuCCGGgGGCg -3'
miRNA:   3'- cCGGCUGGAcg--GCgCCuGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 1627 0.76 0.161328
Target:  5'- -aCCGGCCUGauaCGgGGACCGGgGGCg -3'
miRNA:   3'- ccGGCUGGACg--GCgCCUGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 1690 0.76 0.161328
Target:  5'- -aCCGGCCUGauaCGgGGACCGGgGGCg -3'
miRNA:   3'- ccGGCUGGACg--GCgCCUGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 1898 0.68 0.456644
Target:  5'- cGCCGGCCUuauaCGgGGuCCGGgGGCg -3'
miRNA:   3'- cCGGCUGGAcg--GCgCCuGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 1961 0.68 0.456644
Target:  5'- cGCCGGCCUuauaCGgGGuCCGGgGGCg -3'
miRNA:   3'- cCGGCUGGAcg--GCgCCuGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 2023 0.68 0.456644
Target:  5'- cGCCGGCCUuauaCGgGGuCCGGgGGCg -3'
miRNA:   3'- cCGGCUGGAcg--GCgCCuGGCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 3844 0.66 0.571883
Target:  5'- aGGCgGGgCUugaGCCcCGGACCGGCauauaaGCCg -3'
miRNA:   3'- -CCGgCUgGA---CGGcGCCUGGCCGc-----CGG- -5'
10734 5' -65.5 NC_002794.1 + 6122 0.67 0.535354
Target:  5'- aGCCuACCUGuuGCGGucgAUCGGgGGgCg -3'
miRNA:   3'- cCGGcUGGACggCGCC---UGGCCgCCgG- -5'
10734 5' -65.5 NC_002794.1 + 6593 0.72 0.288447
Target:  5'- cGCCG-CCaUGCuCGCGGGCCGGaaccaGCCa -3'
miRNA:   3'- cCGGCuGG-ACG-GCGCCUGGCCgc---CGG- -5'
10734 5' -65.5 NC_002794.1 + 8092 0.69 0.431799
Target:  5'- uGGCCaGGCCcaucucuagcGCCaccgaGCGGG-CGGCGGCCu -3'
miRNA:   3'- -CCGG-CUGGa---------CGG-----CGCCUgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 10967 0.73 0.242541
Target:  5'- cGGCCGagacguccgauGCCUGCUccgaggccgcaaGUGGACCGugucccgcaccGCGGCCg -3'
miRNA:   3'- -CCGGC-----------UGGACGG------------CGCCUGGC-----------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 11536 0.67 0.553529
Target:  5'- cGGgCGACCgagGaCCGCGG-CUGGUcGCUa -3'
miRNA:   3'- -CCgGCUGGa--C-GGCGCCuGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 11653 0.71 0.333989
Target:  5'- cGGCCGACga--CGCGGcCCGcCGGCCa -3'
miRNA:   3'- -CCGGCUGgacgGCGCCuGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 12158 0.68 0.482236
Target:  5'- cGGCCGAUC-GCC-CGGAUCGucGCcGCCg -3'
miRNA:   3'- -CCGGCUGGaCGGcGCCUGGC--CGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 12195 0.74 0.202882
Target:  5'- cGGCCGGgC-GCCGCucGGacguGCCGGCGGCg -3'
miRNA:   3'- -CCGGCUgGaCGGCG--CC----UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 12399 0.75 0.181052
Target:  5'- uGGCCGACaaccGCaCGCGGACgGcGCGcGCCg -3'
miRNA:   3'- -CCGGCUGga--CG-GCGCCUGgC-CGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.