miRNA display CGI


Results 21 - 40 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 12497 0.7 0.38458
Target:  5'- uGCaCGuucCCgaGCCGCucGACCGGCGGCUg -3'
miRNA:   3'- cCG-GCu--GGa-CGGCGc-CUGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 13261 0.69 0.39221
Target:  5'- cGCCGGgCUGUgGUGGAgCGGCcGCUg -3'
miRNA:   3'- cCGGCUgGACGgCGCCUgGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 13748 0.67 0.51561
Target:  5'- cGGCCGGCCgacaccagacucGCCGCcccGGAgccacCCGGgUGGCUc -3'
miRNA:   3'- -CCGGCUGGa-----------CGGCG---CCU-----GGCC-GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 13796 0.69 0.399938
Target:  5'- cGGCCGuCUUcgcgacggGCC-CGG-CCGGCGGCg -3'
miRNA:   3'- -CCGGCuGGA--------CGGcGCCuGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 14578 0.75 0.189523
Target:  5'- cGGCCGACC-GaaGCGGGCCGuggcgaGCGcGCCg -3'
miRNA:   3'- -CCGGCUGGaCggCGCCUGGC------CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 14636 0.68 0.445782
Target:  5'- gGGCCGggcacggagacGCCggcGCCGCGGcgucgguccgacucGCggCGGCGGUCg -3'
miRNA:   3'- -CCGGC-----------UGGa--CGGCGCC--------------UG--GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 14773 0.71 0.307343
Target:  5'- aGGCCG-CUgagGCCgGCGaGGCCGGCGuGaCCg -3'
miRNA:   3'- -CCGGCuGGa--CGG-CGC-CUGGCCGC-C-GG- -5'
10734 5' -65.5 NC_002794.1 + 16276 0.71 0.313194
Target:  5'- cGCCGcgccCCUGuuGgCGGAgucuagcCUGGCGGCCg -3'
miRNA:   3'- cCGGCu---GGACggC-GCCU-------GGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 16360 0.67 0.535354
Target:  5'- cGCC-ACCcgcacCCGCGuGCaCGGCGGCCg -3'
miRNA:   3'- cCGGcUGGac---GGCGCcUG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 16923 0.66 0.581115
Target:  5'- cGCCGA-CUGUCGuCGGcGCCGaGCcGCCa -3'
miRNA:   3'- cCGGCUgGACGGC-GCC-UGGC-CGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 17653 0.66 0.578342
Target:  5'- cGGCCGccgccaccgccgccACC-GCCGcCGGccCCGGCGGagaCCg -3'
miRNA:   3'- -CCGGC--------------UGGaCGGC-GCCu-GGCCGCC---GG- -5'
10734 5' -65.5 NC_002794.1 + 17931 0.69 0.407762
Target:  5'- cGGCCGGCU--CC-CcGACCuGGCGGCCa -3'
miRNA:   3'- -CCGGCUGGacGGcGcCUGG-CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 17971 0.67 0.544417
Target:  5'- gGGCCGugaGCCUGgCGCccacGGCCGcCGGCg -3'
miRNA:   3'- -CCGGC---UGGACgGCGc---CUGGCcGCCGg -5'
10734 5' -65.5 NC_002794.1 + 18253 0.71 0.327172
Target:  5'- cGGCCGACCggcGaCCGCGaGAUgcgCGGC-GCCg -3'
miRNA:   3'- -CCGGCUGGa--C-GGCGC-CUG---GCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 18680 0.66 0.562686
Target:  5'- cGGCUG-CCgccGCCGUcuccGGCaCGGCGGCg -3'
miRNA:   3'- -CCGGCuGGa--CGGCGc---CUG-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 18728 0.76 0.151855
Target:  5'- aGCCGACgaGCCGCcccaacgccacgacGGCCGGCGGCa -3'
miRNA:   3'- cCGGCUGgaCGGCGc-------------CUGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 19255 0.75 0.172918
Target:  5'- uGCCGACCgGCCGCGGcCCccguGGCGcGUCu -3'
miRNA:   3'- cCGGCUGGaCGGCGCCuGG----CCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 19310 0.69 0.431799
Target:  5'- cGCUGACCgcccacGCCGCGcuggcGACCcGCGcGCCg -3'
miRNA:   3'- cCGGCUGGa-----CGGCGC-----CUGGcCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 19358 0.67 0.526345
Target:  5'- cGCCGcCCgccccGCC-CGGAUCGGgCgGGCCg -3'
miRNA:   3'- cCGGCuGGa----CGGcGCCUGGCC-G-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 19537 0.69 0.415681
Target:  5'- cGGCgCGGCCcGCCGguguCGGACCcGGacugcuucgaGGCCg -3'
miRNA:   3'- -CCG-GCUGGaCGGC----GCCUGG-CCg---------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.