miRNA display CGI


Results 41 - 60 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 19889 0.68 0.473627
Target:  5'- uGGCCGACCgcUGCCGCGagcacGACCuGacccGCCu -3'
miRNA:   3'- -CCGGCUGG--ACGGCGC-----CUGGcCgc--CGG- -5'
10734 5' -65.5 NC_002794.1 + 20353 0.69 0.404621
Target:  5'- aGCCGcuucgagcuggaccACCUGCgccggaucgucgaCGCGGugCGGCGGgaCCg -3'
miRNA:   3'- cCGGC--------------UGGACG-------------GCGCCugGCCGCC--GG- -5'
10734 5' -65.5 NC_002794.1 + 20979 0.67 0.553529
Target:  5'- -aCCGGCagcgGCgGCGGcagcgACCgcGGCGGCCa -3'
miRNA:   3'- ccGGCUGga--CGgCGCC-----UGG--CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 21879 0.72 0.288447
Target:  5'- aGGCCGGCCgcggggUGuCCGCGG-CCugcgucggugguGGCGGCg -3'
miRNA:   3'- -CCGGCUGG------AC-GGCGCCuGG------------CCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 21937 0.66 0.608975
Target:  5'- cGGCgCGGCgCUcGUCGaaGGCCGuCGGCCg -3'
miRNA:   3'- -CCG-GCUG-GA-CGGCgcCUGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 22923 0.74 0.217537
Target:  5'- cGGCCGccaaACCggcacccaucggcugGCCGaCGGGCCGGC-GCCg -3'
miRNA:   3'- -CCGGC----UGGa--------------CGGC-GCCUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 23606 0.72 0.264115
Target:  5'- cGCCGACCcgaccCCGCGGGCgcccggaCGcGCGGCCc -3'
miRNA:   3'- cCGGCUGGac---GGCGCCUG-------GC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 23962 0.67 0.553529
Target:  5'- uGGCUccgaGCCaGCgGCGaGGCCGGC-GCCa -3'
miRNA:   3'- -CCGGc---UGGaCGgCGC-CUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 24010 0.68 0.490921
Target:  5'- gGGCCG-CCgucaCCGCGGcGCCucggcgacGGCGGUCc -3'
miRNA:   3'- -CCGGCuGGac--GGCGCC-UGG--------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 24178 0.71 0.333989
Target:  5'- cGGCCucGACC--CCGCGGcaccgagaccgaGCgCGGCGGCCc -3'
miRNA:   3'- -CCGG--CUGGacGGCGCC------------UG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 26656 0.66 0.590379
Target:  5'- cGGCCGGCUcGUCgGCGGGgUGGaGcGCCa -3'
miRNA:   3'- -CCGGCUGGaCGG-CGCCUgGCCgC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 27388 0.69 0.406975
Target:  5'- gGGUCGACCgaccggaUGaCCGCucGACCGGCcGCCc -3'
miRNA:   3'- -CCGGCUGG-------AC-GGCGc-CUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 30736 0.67 0.517393
Target:  5'- cGcCCGaACUgGCCGCGG-CUGGCGcGCUg -3'
miRNA:   3'- cC-GGC-UGGaCGGCGCCuGGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 31039 0.75 0.168975
Target:  5'- gGGCCGACagauaggGCaGCGG-CaCGGCGGCCa -3'
miRNA:   3'- -CCGGCUGga-----CGgCGCCuG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 32293 0.74 0.202424
Target:  5'- cGCCG-CCgccGCCGCGGcggccgcGCCGGCcgcGGCCg -3'
miRNA:   3'- cCGGCuGGa--CGGCGCC-------UGGCCG---CCGG- -5'
10734 5' -65.5 NC_002794.1 + 32401 0.71 0.320459
Target:  5'- cGCCGACUUGCUGCGGugCaGCacgaaGCUg -3'
miRNA:   3'- cCGGCUGGACGGCGCCugGcCGc----CGG- -5'
10734 5' -65.5 NC_002794.1 + 32589 0.74 0.202882
Target:  5'- uGCCGggGCCgggGCCG-GGGCCGG-GGCCg -3'
miRNA:   3'- cCGGC--UGGa--CGGCgCCUGGCCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 32798 0.66 0.603388
Target:  5'- cGGUCGGuCUUcGCCGCGaccgucgucuucgucGGCCucGCGGCCg -3'
miRNA:   3'- -CCGGCU-GGA-CGGCGC---------------CUGGc-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 32862 0.74 0.217051
Target:  5'- cGGCCGAgCCggcggGCgGCGGcGgCGGCGGCg -3'
miRNA:   3'- -CCGGCU-GGa----CGgCGCC-UgGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 32916 0.67 0.517393
Target:  5'- cGGgCGGCagcagGUCgGCGGGaagcgcUCGGCGGCCa -3'
miRNA:   3'- -CCgGCUGga---CGG-CGCCU------GGCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.