miRNA display CGI


Results 61 - 80 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 33433 0.71 0.333989
Target:  5'- gGGCUGGuCCcGgUGCaGGACCucgGGCGGCCg -3'
miRNA:   3'- -CCGGCU-GGaCgGCG-CCUGG---CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 33574 0.66 0.562686
Target:  5'- -aUCGACCagGUgGUGGACCGccuGCGGCg -3'
miRNA:   3'- ccGGCUGGa-CGgCGCCUGGC---CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 33689 0.66 0.562686
Target:  5'- cGCUGcGCCUGuUCGUGG-CgGGCGaGCCg -3'
miRNA:   3'- cCGGC-UGGAC-GGCGCCuGgCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 34038 0.73 0.247929
Target:  5'- aGCCG-CCUGCUGcCGGGCCGGC--CCg -3'
miRNA:   3'- cCGGCuGGACGGC-GCCUGGCCGccGG- -5'
10734 5' -65.5 NC_002794.1 + 34063 0.77 0.136969
Target:  5'- cGCaCGACCcGCCGUucccGCCGGCGGCCg -3'
miRNA:   3'- cCG-GCUGGaCGGCGcc--UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 34251 0.73 0.231544
Target:  5'- cGGCUG-CC-GCCgcagGCGGACCgcgcgcaGGCGGCCa -3'
miRNA:   3'- -CCGGCuGGaCGG----CGCCUGG-------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 34345 0.66 0.581115
Target:  5'- cGGCCGcGCCguuCCGCccgcucuaccuGGACgacaacacggCGGUGGCCa -3'
miRNA:   3'- -CCGGC-UGGac-GGCG-----------CCUG----------GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 34711 0.68 0.465095
Target:  5'- aGGCCcGCCggcGCCacgaGGcGCgGGCGGCCg -3'
miRNA:   3'- -CCGGcUGGa--CGGcg--CC-UGgCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 34798 0.71 0.306699
Target:  5'- cGGCCGaACCgGCC-CGGGCCGcGCGacaccacccccucGCCg -3'
miRNA:   3'- -CCGGC-UGGaCGGcGCCUGGC-CGC-------------CGG- -5'
10734 5' -65.5 NC_002794.1 + 35986 0.67 0.508503
Target:  5'- cGCgGACCcgguuuuauUGUCGCGGGgcuCgGGCGGCg -3'
miRNA:   3'- cCGgCUGG---------ACGGCGCCU---GgCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 36391 0.69 0.423694
Target:  5'- cGGUCGACCcagaaaucGaCCGCGuAgCGGCGGCUg -3'
miRNA:   3'- -CCGGCUGGa-------C-GGCGCcUgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 36919 0.67 0.55079
Target:  5'- cGCCGGCCccgcGaCCGCGGAggagaaaguccgcgUCGcGCGGCg -3'
miRNA:   3'- cCGGCUGGa---C-GGCGCCU--------------GGC-CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 37268 0.67 0.499678
Target:  5'- cGUCGGCggGCgCGCGGGCgCGGCGuaCa -3'
miRNA:   3'- cCGGCUGgaCG-GCGCCUG-GCCGCcgG- -5'
10734 5' -65.5 NC_002794.1 + 37490 0.66 0.581115
Target:  5'- cGGCgCGACCaGCCGCacGCgCGuGUGGUCg -3'
miRNA:   3'- -CCG-GCUGGaCGGCGccUG-GC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 37742 0.7 0.347933
Target:  5'- cGCCG-CCgGCgGCGG-CgCGGCGGCg -3'
miRNA:   3'- cCGGCuGGaCGgCGCCuG-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 37915 0.71 0.331933
Target:  5'- cGCCGGCCUcaacgucaaccGCCGCGGccgcccguGCCucggcgacucgcucGGCGGCUc -3'
miRNA:   3'- cCGGCUGGA-----------CGGCGCC--------UGG--------------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 38425 0.76 0.151855
Target:  5'- cGCCGACUccaugGCgGCGGGCCGgacugaggagccggcGCGGCCg -3'
miRNA:   3'- cCGGCUGGa----CGgCGCCUGGC---------------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 40306 0.66 0.559934
Target:  5'- cGCCGAggagggacgguuuuCCUcacccGCCGCGcGgacgcgccACCGGCGGCg -3'
miRNA:   3'- cCGGCU--------------GGA-----CGGCGC-C--------UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 40400 0.66 0.562686
Target:  5'- cGCCGAUUcgGUCGCGGggucgGCCGGCGaCUc -3'
miRNA:   3'- cCGGCUGGa-CGGCGCC-----UGGCCGCcGG- -5'
10734 5' -65.5 NC_002794.1 + 40518 0.74 0.217051
Target:  5'- cGGCCG-CCgacgcGCCGaCGGgagacgaggggGCCGGCGGCa -3'
miRNA:   3'- -CCGGCuGGa----CGGC-GCC-----------UGGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.