miRNA display CGI


Results 81 - 100 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 40575 0.66 0.584817
Target:  5'- cGCCGuCCUgGCCGCGGGCCcucuccuccgagucGUcGCCg -3'
miRNA:   3'- cCGGCuGGA-CGGCGCCUGGc-------------CGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 41221 0.74 0.198791
Target:  5'- cGGCCu-CCggggauuccucccacGCCGCGGccgccgacGCCGGCGGCCc -3'
miRNA:   3'- -CCGGcuGGa--------------CGGCGCC--------UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 41365 0.71 0.307343
Target:  5'- cGUCGGCCUucgcGCuCGCGGcgccuccuUCGGCGGCCc -3'
miRNA:   3'- cCGGCUGGA----CG-GCGCCu-------GGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 42072 0.68 0.447444
Target:  5'- uGGCCGACUgGCCGCGGGauuccuucuCCaggaucuugaacaGGCGGgUg -3'
miRNA:   3'- -CCGGCUGGaCGGCGCCU---------GG-------------CCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 42213 0.75 0.189523
Target:  5'- cGCCGGUCUGCCGCuGGAUcagccgcgagaCGGCGGCg -3'
miRNA:   3'- cCGGCUGGACGGCG-CCUG-----------GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 42468 0.66 0.581115
Target:  5'- cGUCGuCCaUGUCGCGcGcGCCGG-GGCCg -3'
miRNA:   3'- cCGGCuGG-ACGGCGC-C-UGGCCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 42575 0.74 0.193888
Target:  5'- cGGCgGACCcGCgGacggaggaGGGCgCGGCGGCCg -3'
miRNA:   3'- -CCGgCUGGaCGgCg-------CCUG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 42672 0.69 0.407762
Target:  5'- cGCCGGCaCgggguacGCCGa-GACCGGCGaGCCc -3'
miRNA:   3'- cCGGCUG-Ga------CGGCgcCUGGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 43030 0.67 0.53445
Target:  5'- cGUCGGCCUccaucgcGCgGCaGGCCGaGCcGGCCa -3'
miRNA:   3'- cCGGCUGGA-------CGgCGcCUGGC-CG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 44207 0.67 0.508503
Target:  5'- gGGCCGACgUccggcucgggcGCCGaGGGCUcggugccgGGCGGCUc -3'
miRNA:   3'- -CCGGCUGgA-----------CGGCgCCUGG--------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 44301 0.69 0.423694
Target:  5'- gGGCCGGCgaGgcggggagcgaCCGCGaGCgCGGCGGCg -3'
miRNA:   3'- -CCGGCUGgaC-----------GGCGCcUG-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 44418 0.7 0.369618
Target:  5'- cGGCCGGC--GCCgaGCGGcucgacgacACCGGCGcGCCc -3'
miRNA:   3'- -CCGGCUGgaCGG--CGCC---------UGGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 44511 0.67 0.556271
Target:  5'- cGGCCcaGACCgggcccgUGuCCGCGaGcgcgccgucgucgucGCCGGCGGCg -3'
miRNA:   3'- -CCGG--CUGG-------AC-GGCGC-C---------------UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 44702 0.72 0.268729
Target:  5'- cGCCGcCCgGCCGCGaccgcggcgacgucGGCCGGCGccGCCg -3'
miRNA:   3'- cCGGCuGGaCGGCGC--------------CUGGCCGC--CGG- -5'
10734 5' -65.5 NC_002794.1 + 44997 0.72 0.270475
Target:  5'- uGGCCgugcgGACCUGuuGCaGACUcGUGGCCg -3'
miRNA:   3'- -CCGG-----CUGGACggCGcCUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 46745 0.66 0.571883
Target:  5'- -aCCGACUUccGCCGCuGGAUCGaCGGCg -3'
miRNA:   3'- ccGGCUGGA--CGGCG-CCUGGCcGCCGg -5'
10734 5' -65.5 NC_002794.1 + 47333 0.67 0.526345
Target:  5'- -cCCGGCUc-CCGCGG--CGGCGGCCu -3'
miRNA:   3'- ccGGCUGGacGGCGCCugGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 48073 0.68 0.478783
Target:  5'- uGGCCGGCCagcgggagcagccGCCGCucGCCGGCgucaGGCUc -3'
miRNA:   3'- -CCGGCUGGa------------CGGCGccUGGCCG----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 48203 0.69 0.431799
Target:  5'- cGGCCGGCCU-UCGagguaGaGGCagagcaGGCGGCCg -3'
miRNA:   3'- -CCGGCUGGAcGGCg----C-CUGg-----CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 48548 0.71 0.307343
Target:  5'- cGGCCGACCacuccgccgGCCGCccguccaGAUgGGCGaGCCg -3'
miRNA:   3'- -CCGGCUGGa--------CGGCGc------CUGgCCGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.