miRNA display CGI


Results 101 - 120 of 469 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 48614 0.68 0.448276
Target:  5'- cGUCGGCCUcagaCGCGGAgCGGCcgucggGGCCc -3'
miRNA:   3'- cCGGCUGGAcg--GCGCCUgGCCG------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 49402 0.79 0.091257
Target:  5'- cGUCGGCCacggcgGCCGCGGcGgCGGCGGCCg -3'
miRNA:   3'- cCGGCUGGa-----CGGCGCC-UgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 49450 0.7 0.347933
Target:  5'- cGGUCGucGCCguggcGCCGcCGuGACCGGCcGCCg -3'
miRNA:   3'- -CCGGC--UGGa----CGGC-GC-CUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 49581 0.66 0.56912
Target:  5'- cGGUCGACCggaucCCGaucgcgaucggcgaCGGcgggcGCCGGCGGCg -3'
miRNA:   3'- -CCGGCUGGac---GGC--------------GCC-----UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 50354 0.7 0.362288
Target:  5'- cGGCuCcGCCaUGaCCGCGGAgCCGGcCGGCa -3'
miRNA:   3'- -CCG-GcUGG-AC-GGCGCCU-GGCC-GCCGg -5'
10734 5' -65.5 NC_002794.1 + 50625 0.66 0.590379
Target:  5'- aGCUG-CUUGCC-CGu-CCGGCGGUCg -3'
miRNA:   3'- cCGGCuGGACGGcGCcuGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 50740 0.67 0.497043
Target:  5'- cGGCCG-CCUcgacucgcucguccGCCcCGGG-CGGCGGCg -3'
miRNA:   3'- -CCGGCuGGA--------------CGGcGCCUgGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 51189 0.73 0.255638
Target:  5'- cGCCGAUCguucucguucgcucGcCCGCGGAgCGGCcGGCCg -3'
miRNA:   3'- cCGGCUGGa-------------C-GGCGCCUgGCCG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 52622 0.71 0.311887
Target:  5'- cGcCCGACCgccGCCGCgucgaacgggagccGGAgCGGCGGCa -3'
miRNA:   3'- cC-GGCUGGa--CGGCG--------------CCUgGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 52841 0.66 0.587597
Target:  5'- aGGCCGgucagcacguucGCCacgGCCGCGGccuuCCGGUacacccgaugguggGGUCg -3'
miRNA:   3'- -CCGGC------------UGGa--CGGCGCCu---GGCCG--------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 53255 0.73 0.253416
Target:  5'- cGCCGGCgUcGCCGCGcGACaacggGGCGGCg -3'
miRNA:   3'- cCGGCUGgA-CGGCGC-CUGg----CCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 53309 0.73 0.250112
Target:  5'- cGGUCGGCCggcGCCGCGaGAUCGGCucgaaccgcaccuccGGCg -3'
miRNA:   3'- -CCGGCUGGa--CGGCGC-CUGGCCG---------------CCGg -5'
10734 5' -65.5 NC_002794.1 + 53510 0.76 0.152566
Target:  5'- gGGUCGcCCaguagauggagaaGCCGUGGGCgCGGCGGCCg -3'
miRNA:   3'- -CCGGCuGGa------------CGGCGCCUG-GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 53613 0.66 0.608975
Target:  5'- gGGCCG-CCgcagcGUCGgaCGGACgaGGuCGGCCg -3'
miRNA:   3'- -CCGGCuGGa----CGGC--GCCUGg-CC-GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 53745 0.76 0.153995
Target:  5'- cGGCCGcCgCUGCCGCcGccgcuGCCGGCGGCg -3'
miRNA:   3'- -CCGGCuG-GACGGCGcC-----UGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 53880 0.67 0.544417
Target:  5'- cGGCgGACUccucGUCG-GGAcuCCGGCGGCg -3'
miRNA:   3'- -CCGgCUGGa---CGGCgCCU--GGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 54978 0.77 0.130656
Target:  5'- uGCaCGACCcGCCGCGGcgaCGGCGGCg -3'
miRNA:   3'- cCG-GCUGGaCGGCGCCug-GCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 55196 0.73 0.226961
Target:  5'- cGGCCcuaacACCggcGCgGCGGagGCCGGCGGUCg -3'
miRNA:   3'- -CCGGc----UGGa--CGgCGCC--UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 55262 0.7 0.347933
Target:  5'- cGCCGAagaGCCGgGGGgCGGCGGUg -3'
miRNA:   3'- cCGGCUggaCGGCgCCUgGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 55301 0.67 0.526345
Target:  5'- cGGCggCGGCgUcGCgGCGGGCgCgGGCGGCUu -3'
miRNA:   3'- -CCG--GCUGgA-CGgCGCCUG-G-CCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.