miRNA display CGI


Results 1 - 20 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 195578 0.67 0.517393
Target:  5'- -cCCGACC-GaCCGcCGGACCGGCcgacgcGCCc -3'
miRNA:   3'- ccGGCUGGaC-GGC-GCCUGGCCGc-----CGG- -5'
10734 5' -65.5 NC_002794.1 + 195466 0.66 0.571883
Target:  5'- cGCCccGCUUGCC-CGGacucgcccGCCGcGCGGCCu -3'
miRNA:   3'- cCGGc-UGGACGGcGCC--------UGGC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 194492 0.66 0.581115
Target:  5'- aGCCGccCCU-CCGCGcccGGCCcGCGGCCc -3'
miRNA:   3'- cCGGCu-GGAcGGCGC---CUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 194449 0.66 0.581115
Target:  5'- cGGCCGcuCCUuaaaccaguaGCCGCGcuCCaGCGGCUc -3'
miRNA:   3'- -CCGGCu-GGA----------CGGCGCcuGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 194311 0.66 0.608975
Target:  5'- cGCCagcGCCUGCCgcaGCGGAUCGcGCcacgGGCUc -3'
miRNA:   3'- cCGGc--UGGACGG---CGCCUGGC-CG----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 193986 0.66 0.581115
Target:  5'- cGGCCGcuACC-GCCGCccccGGcuucGCCuucGCGGCCg -3'
miRNA:   3'- -CCGGC--UGGaCGGCG----CC----UGGc--CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 193058 0.67 0.535354
Target:  5'- cGcCCGcACCgGCUGCGGGCCGucGCGGg- -3'
miRNA:   3'- cC-GGC-UGGaCGGCGCCUGGC--CGCCgg -5'
10734 5' -65.5 NC_002794.1 + 192961 0.76 0.153995
Target:  5'- aGGCCGACgaGCCGUgcaGGACCagggcGCGGUCg -3'
miRNA:   3'- -CCGGCUGgaCGGCG---CCUGGc----CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 192600 0.73 0.232058
Target:  5'- cGCCGACCacuucucuccGCCagguGCGGACagucgGGCGGCCg -3'
miRNA:   3'- cCGGCUGGa---------CGG----CGCCUGg----CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 192385 0.67 0.553529
Target:  5'- gGGCUGACCgccaccgccgcGCCGgGGuagucgaaacGCCGcgacggguccGCGGCCg -3'
miRNA:   3'- -CCGGCUGGa----------CGGCgCC----------UGGC----------CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 192162 0.69 0.415681
Target:  5'- cGGCgGAgCCUGCgGUaGGuCCggcgaaGGCGGCCg -3'
miRNA:   3'- -CCGgCU-GGACGgCG-CCuGG------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 192024 0.66 0.562686
Target:  5'- cGGCUGcuguuUCUGUgGCGG--CGGCGGCUg -3'
miRNA:   3'- -CCGGCu----GGACGgCGCCugGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 191688 0.68 0.477061
Target:  5'- cGGCgUGcCCUcGUCGCGGAccaccuccucgucguCCGaGCGGCCc -3'
miRNA:   3'- -CCG-GCuGGA-CGGCGCCU---------------GGC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 191373 0.67 0.526345
Target:  5'- gGGCCGGacCCU-CCGC--GCCcGCGGCCg -3'
miRNA:   3'- -CCGGCU--GGAcGGCGccUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 190726 0.72 0.288447
Target:  5'- aGCCGgagacgcagcGCCcGCCGCcgucucgacgGGGgCGGCGGCCg -3'
miRNA:   3'- cCGGC----------UGGaCGGCG----------CCUgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 190280 0.68 0.481372
Target:  5'- cGCCGGuagaaguCCgUGUCGaaGcGCCGGCGGCCg -3'
miRNA:   3'- cCGGCU-------GG-ACGGCgcC-UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 190007 0.66 0.590379
Target:  5'- -aUCGGCCcGUC-CGGGuccaUCGGCGGCCg -3'
miRNA:   3'- ccGGCUGGaCGGcGCCU----GGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 189901 0.67 0.544417
Target:  5'- cGCCGucagcGCC-GCCGCGcGACCGcccgcucgcccGaCGGCCg -3'
miRNA:   3'- cCGGC-----UGGaCGGCGC-CUGGC-----------C-GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 189852 0.69 0.421281
Target:  5'- cGGCCGcggaGCCgucggcgucgucGCCGCcGACCGGCccgcucgGGCCc -3'
miRNA:   3'- -CCGGC----UGGa-----------CGGCGcCUGGCCG-------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 189649 0.74 0.221959
Target:  5'- uGGCUGACUaGCCgGCuGGCCGaGCGGUCg -3'
miRNA:   3'- -CCGGCUGGaCGG-CGcCUGGC-CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.