miRNA display CGI


Results 41 - 60 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 183508 0.71 0.307343
Target:  5'- cGGCCccgaGACCcaUGUCGCGG-CCGuGCGcGCCc -3'
miRNA:   3'- -CCGG----CUGG--ACGGCGCCuGGC-CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 183465 0.69 0.423694
Target:  5'- cGCCcGCCcGCCGCGaGuCCG-CGGCCc -3'
miRNA:   3'- cCGGcUGGaCGGCGC-CuGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 183162 0.7 0.35506
Target:  5'- cGGCCGGgCUGCCcgagccggucGgGGACCGaGaCGcGCCg -3'
miRNA:   3'- -CCGGCUgGACGG----------CgCCUGGC-C-GC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 182992 0.75 0.172918
Target:  5'- cGGCCGGCgCUucGCCGCGGGcgccCCGcGCGcGCCc -3'
miRNA:   3'- -CCGGCUG-GA--CGGCGCCU----GGC-CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 182809 0.67 0.553529
Target:  5'- cGGUCGAcagcucguCCaGCCGCGGcACCGacacgaccaccaGCGuGCCg -3'
miRNA:   3'- -CCGGCU--------GGaCGGCGCC-UGGC------------CGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 182541 0.67 0.499678
Target:  5'- cGGCagCGACUgcGCCGCGG-CCGGCaccGUCa -3'
miRNA:   3'- -CCG--GCUGGa-CGGCGCCuGGCCGc--CGG- -5'
10734 5' -65.5 NC_002794.1 + 182332 0.7 0.362288
Target:  5'- gGGCgGGCggGCgaGCGGACgGGCGGgCg -3'
miRNA:   3'- -CCGgCUGgaCGg-CGCCUGgCCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 182300 0.67 0.544417
Target:  5'- gGGUgGACggGCagacggGCGGACgGGCGGUCn -3'
miRNA:   3'- -CCGgCUGgaCGg-----CGCCUGgCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 181750 0.67 0.526345
Target:  5'- cGGCCGGCCaGcCCGCuGACgccgaUGGCGccgcGCCg -3'
miRNA:   3'- -CCGGCUGGaC-GGCGcCUG-----GCCGC----CGG- -5'
10734 5' -65.5 NC_002794.1 + 181533 0.73 0.230519
Target:  5'- cGCCcGCC-GCCgGCGGGCCGGCgcucucggucgccgGGCCa -3'
miRNA:   3'- cCGGcUGGaCGG-CGCCUGGCCG--------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 181383 0.74 0.212236
Target:  5'- gGGcCCGGCCgucaguucGCC-CGGGCCGGCcGCCg -3'
miRNA:   3'- -CC-GGCUGGa-------CGGcGCCUGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 180899 0.74 0.202882
Target:  5'- cGGCCgcgGACUcgGCCGCGGucucGCCGGC-GCCg -3'
miRNA:   3'- -CCGG---CUGGa-CGGCGCC----UGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 180859 0.69 0.399938
Target:  5'- --aCGGCCUcgucggagGCgGCGGAuCCGGCGcGCCc -3'
miRNA:   3'- ccgGCUGGA--------CGgCGCCU-GGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 180744 0.66 0.599667
Target:  5'- cGCCGuCCgGCUccucgGCGGcuUCGGCGGCa -3'
miRNA:   3'- cCGGCuGGaCGG-----CGCCu-GGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 180682 0.67 0.526345
Target:  5'- cGCCGGCCgcuCC-CGGcgcCCGGCGGgCg -3'
miRNA:   3'- cCGGCUGGac-GGcGCCu--GGCCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 180599 0.78 0.118545
Target:  5'- aGCUGuCCUcgcGCCGCGGGCCacgacacGGCGGCCc -3'
miRNA:   3'- cCGGCuGGA---CGGCGCCUGG-------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 180387 0.68 0.489178
Target:  5'- uGCCGGCCaGCUGCucgaacgGGACCGacgucgcguugaaGCgGGCCa -3'
miRNA:   3'- cCGGCUGGaCGGCG-------CCUGGC-------------CG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 180004 0.66 0.590379
Target:  5'- cGGCgGGCCcgGCCaCGacgacGGCC-GCGGCCg -3'
miRNA:   3'- -CCGgCUGGa-CGGcGC-----CUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 179683 0.69 0.414885
Target:  5'- cGGCggCGACggugGCgGCGGcgacgguggcgacGCCGGCGGCUa -3'
miRNA:   3'- -CCG--GCUGga--CGgCGCC-------------UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 179177 0.66 0.571883
Target:  5'- aGGUCGucccggaccACCgcagGCaCGCcccGGCCGGCGGCa -3'
miRNA:   3'- -CCGGC---------UGGa---CG-GCGc--CUGGCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.