miRNA display CGI


Results 61 - 80 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 167736 0.69 0.39221
Target:  5'- aGGCaCGAUgCUGCCucGCGGuCCGGUGaGCUu -3'
miRNA:   3'- -CCG-GCUG-GACGG--CGCCuGGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 156967 0.67 0.505848
Target:  5'- uGGCCGaggaugucacgcguGCCUcuauguaagGUCcuaGCGGGCCcGCGGCCa -3'
miRNA:   3'- -CCGGC--------------UGGA---------CGG---CGCCUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 156402 0.79 0.095773
Target:  5'- cGGCCGgcGCCgcgGCCGCGGccacgGCCGGCGGgUg -3'
miRNA:   3'- -CCGGC--UGGa--CGGCGCC-----UGGCCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 156207 0.67 0.508503
Target:  5'- cGGUCGGaggGCCgGCGacuccGCCGGCGGCUc -3'
miRNA:   3'- -CCGGCUggaCGG-CGCc----UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 154389 0.68 0.465095
Target:  5'- gGGCaCG-CCcGUucgCGUGGuGCCGGUGGCCa -3'
miRNA:   3'- -CCG-GCuGGaCG---GCGCC-UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 154351 0.73 0.235683
Target:  5'- cGGCCGAgCUcccgcgcgguccagGCCGCGG--CGGCGGCg -3'
miRNA:   3'- -CCGGCUgGA--------------CGGCGCCugGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 154103 0.66 0.581115
Target:  5'- uGGCUuggGACCgcaaagucaCCG-GGAUCGGCGGCg -3'
miRNA:   3'- -CCGG---CUGGac-------GGCgCCUGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 153668 0.68 0.465095
Target:  5'- cGGCCG-CCgGUugugaggcucgaCGCGcGACCGGCGaCCg -3'
miRNA:   3'- -CCGGCuGGaCG------------GCGC-CUGGCCGCcGG- -5'
10734 5' -65.5 NC_002794.1 + 153281 0.67 0.532645
Target:  5'- cGCCGACCcgUcgcccgagacgcagGCCGgGGAgCGGCuGGUCu -3'
miRNA:   3'- cCGGCUGG--A--------------CGGCgCCUgGCCG-CCGG- -5'
10734 5' -65.5 NC_002794.1 + 152588 0.72 0.282354
Target:  5'- cGGCCGccacgucCCUGCggCGCGGGCCcaaGCGGCg -3'
miRNA:   3'- -CCGGCu------GGACG--GCGCCUGGc--CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 152412 0.76 0.157623
Target:  5'- cGCCGACCUGCUGCcccGGGCCGucuguCGGCa -3'
miRNA:   3'- cCGGCUGGACGGCG---CCUGGCc----GCCGg -5'
10734 5' -65.5 NC_002794.1 + 151628 0.72 0.270475
Target:  5'- cGGCCGGCaCUuggcucGCCGCcGGCCGGCacuuGGCUc -3'
miRNA:   3'- -CCGGCUG-GA------CGGCGcCUGGCCG----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 151594 0.74 0.202882
Target:  5'- cGCCG-CC-GCCGCGGGCCcGCGGUUc -3'
miRNA:   3'- cCGGCuGGaCGGCGCCUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 150271 0.71 0.333989
Target:  5'- cGGUCGACUgacGCCGCacuacgcgccGGugUGGUGGCa -3'
miRNA:   3'- -CCGGCUGGa--CGGCG----------CCugGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 150165 0.74 0.209392
Target:  5'- cGGCCGGCUUGCCa--GACCGGCagaccuucgugguggGGCCu -3'
miRNA:   3'- -CCGGCUGGACGGcgcCUGGCCG---------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 149967 1.12 0.000409
Target:  5'- uGGCCGACCUGCCGCGGACCGGCGGCCg -3'
miRNA:   3'- -CCGGCUGGACGGCGCCUGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 149719 0.71 0.327172
Target:  5'- gGGCCG-CCUGCCuCGcuaCGGCGuGCCg -3'
miRNA:   3'- -CCGGCuGGACGGcGCcugGCCGC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 149686 0.68 0.482236
Target:  5'- cGCuCGACUgGCCGCGGGggccgcCUGGCGGg- -3'
miRNA:   3'- cCG-GCUGGaCGGCGCCU------GGCCGCCgg -5'
10734 5' -65.5 NC_002794.1 + 149335 0.66 0.581115
Target:  5'- cGGaCCGaACCgGCCGgGGuCgCGGgGGCg -3'
miRNA:   3'- -CC-GGC-UGGaCGGCgCCuG-GCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 148593 0.71 0.307343
Target:  5'- cGGCCGGCC-GCCGUccacGGACU--CGGCCc -3'
miRNA:   3'- -CCGGCUGGaCGGCG----CCUGGccGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.