miRNA display CGI


Results 81 - 100 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 147805 0.7 0.352911
Target:  5'- aGCUGACgCUGaaGCGGcuccagagcaccuuGCCGGUGGUCg -3'
miRNA:   3'- cCGGCUG-GACggCGCC--------------UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 147668 0.68 0.456644
Target:  5'- -uCCGgaGCCUGCuCGCgcucgaGGAcCCGGCGGCg -3'
miRNA:   3'- ccGGC--UGGACG-GCG------CCU-GGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 147266 0.69 0.39221
Target:  5'- cGCuCGAgCUGCCGUGGccguCCGGCuGCa -3'
miRNA:   3'- cCG-GCUgGACGGCGCCu---GGCCGcCGg -5'
10734 5' -65.5 NC_002794.1 + 147196 0.76 0.143562
Target:  5'- uGGuuGAacuCUUGCCGuCGGGCCGG-GGCCg -3'
miRNA:   3'- -CCggCU---GGACGGC-GCCUGGCCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 146995 0.73 0.226961
Target:  5'- cGCCGGCCgacGUCgGCGG--CGGCGGCCg -3'
miRNA:   3'- cCGGCUGGa--CGG-CGCCugGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 146744 0.68 0.482236
Target:  5'- --aCGACggGCCGCGGAUCGGgGGa- -3'
miRNA:   3'- ccgGCUGgaCGGCGCCUGGCCgCCgg -5'
10734 5' -65.5 NC_002794.1 + 146699 0.7 0.377049
Target:  5'- aGGCCGACU----GCGGgaGCUGGUGGCCc -3'
miRNA:   3'- -CCGGCUGGacggCGCC--UGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 146321 0.67 0.514719
Target:  5'- cGCCGACgC-GCgGCGGAuucgaCCccgucgucgaucgcGGCGGCCg -3'
miRNA:   3'- cCGGCUG-GaCGgCGCCU-----GG--------------CCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 145914 0.66 0.562686
Target:  5'- aGUCGACCgcGCCGagcggagGGGCCGGCGagaGCg -3'
miRNA:   3'- cCGGCUGGa-CGGCg------CCUGGCCGC---CGg -5'
10734 5' -65.5 NC_002794.1 + 145863 0.68 0.473627
Target:  5'- aGCCG-CCgaggGCCGCgaccGGACCGcgagaaGCGGCg -3'
miRNA:   3'- cCGGCuGGa---CGGCG----CCUGGC------CGCCGg -5'
10734 5' -65.5 NC_002794.1 + 145794 0.72 0.288447
Target:  5'- cGGCCGGCUcggacgacgacGCCGCc-GCCGGCGGCg -3'
miRNA:   3'- -CCGGCUGGa----------CGGCGccUGGCCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 145556 0.8 0.079086
Target:  5'- cGGcCCGACCgguucgcggacgagcGCCGaCGGAgCGGCGGCCg -3'
miRNA:   3'- -CC-GGCUGGa--------------CGGC-GCCUgGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 145437 0.66 0.571883
Target:  5'- cGGCUcACgaGCuCGCGaGCCGGCGGaCa -3'
miRNA:   3'- -CCGGcUGgaCG-GCGCcUGGCCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 144831 0.66 0.599667
Target:  5'- cGCgGACgaGCCGCuGGAgCGG-GuGCCg -3'
miRNA:   3'- cCGgCUGgaCGGCG-CCUgGCCgC-CGG- -5'
10734 5' -65.5 NC_002794.1 + 143698 0.68 0.465095
Target:  5'- gGGUCGcguuGCCcaCCGCGGGCCccGGCGGgCg -3'
miRNA:   3'- -CCGGC----UGGacGGCGCCUGG--CCGCCgG- -5'
10734 5' -65.5 NC_002794.1 + 143477 0.68 0.456644
Target:  5'- cGGCUGGCagacgaUGUCGCuGGCCGcGgGGCUg -3'
miRNA:   3'- -CCGGCUGg-----ACGGCGcCUGGC-CgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 143403 0.69 0.403056
Target:  5'- uGCuCGACC-GgCGCGGGCCGGgcgaagguccggaaGGCCa -3'
miRNA:   3'- cCG-GCUGGaCgGCGCCUGGCCg-------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 142893 0.69 0.423694
Target:  5'- cGGCaGGCgUGCC-CGGcguccuCCGGgGGCCg -3'
miRNA:   3'- -CCGgCUGgACGGcGCCu-----GGCCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 142790 0.7 0.377049
Target:  5'- cGGCgCGugCaGCCGCaguucGGCCGGguCGGCCu -3'
miRNA:   3'- -CCG-GCugGaCGGCGc----CUGGCC--GCCGG- -5'
10734 5' -65.5 NC_002794.1 + 142473 0.7 0.369618
Target:  5'- cGCCGGCa--CCGUGGACgCGuGCGGCg -3'
miRNA:   3'- cCGGCUGgacGGCGCCUG-GC-CGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.