Results 21 - 40 of 469 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10734 | 5' | -65.5 | NC_002794.1 | + | 185411 | 0.66 | 0.590379 |
Target: 5'- gGGcCCGACC-GCCGUcGACuCGacGCGGCg -3' miRNA: 3'- -CC-GGCUGGaCGGCGcCUG-GC--CGCCGg -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 105701 | 0.66 | 0.590379 |
Target: 5'- cGCCGucGCCU-CCGCucgaGGCgaucgCGGCGGCCg -3' miRNA: 3'- cCGGC--UGGAcGGCGc---CUG-----GCCGCCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 58674 | 0.66 | 0.603388 |
Target: 5'- cGGCCGugcacgcgcacuaccGCCaGCUGCucGGGCUGGUGcGCUu -3' miRNA: 3'- -CCGGC---------------UGGaCGGCG--CCUGGCCGC-CGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 105960 | 0.66 | 0.608044 |
Target: 5'- cGGCUgggGGCC-GCCGCGGAcgaguuuCCGGUcGCg -3' miRNA: 3'- -CCGG---CUGGaCGGCGCCU-------GGCCGcCGg -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 21937 | 0.66 | 0.608975 |
Target: 5'- cGGCgCGGCgCUcGUCGaaGGCCGuCGGCCg -3' miRNA: 3'- -CCG-GCUG-GA-CGGCgcCUGGCcGCCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 53613 | 0.66 | 0.608975 |
Target: 5'- gGGCCG-CCgcagcGUCGgaCGGACgaGGuCGGCCg -3' miRNA: 3'- -CCGGCuGGa----CGGC--GCCUGg-CC-GCCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 104621 | 0.66 | 0.608975 |
Target: 5'- aGCuCGGCCagcagcucguUGUCGCGcGCCGaGCaGGCCa -3' miRNA: 3'- cCG-GCUGG----------ACGGCGCcUGGC-CG-CCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 102888 | 0.66 | 0.608975 |
Target: 5'- uGGCCGACCuggUGCCcaaGCGGGucuacCUGGgGGaCg -3' miRNA: 3'- -CCGGCUGG---ACGG---CGCCU-----GGCCgCCgG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 84436 | 0.66 | 0.608975 |
Target: 5'- cGG-CGACgUGCCGaacgaGGGCCuGCcGCCg -3' miRNA: 3'- -CCgGCUGgACGGCg----CCUGGcCGcCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 194311 | 0.66 | 0.608975 |
Target: 5'- cGCCagcGCCUGCCgcaGCGGAUCGcGCcacgGGCUc -3' miRNA: 3'- cCGGc--UGGACGG---CGCCUGGC-CG----CCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 63417 | 0.66 | 0.608044 |
Target: 5'- cGGCCGGacggacgaugagcgcCCgacaccaccacgGCCGCGGcggcgacgaugacgACgaggCGGCGGCCg -3' miRNA: 3'- -CCGGCU---------------GGa-----------CGGCGCC--------------UG----GCCGCCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 32798 | 0.66 | 0.603388 |
Target: 5'- cGGUCGGuCUUcGCCGCGaccgucgucuucgucGGCCucGCGGCCg -3' miRNA: 3'- -CCGGCU-GGA-CGGCGC---------------CUGGc-CGCCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 127520 | 0.66 | 0.594091 |
Target: 5'- gGGCUGugCcGCCGCGauccuGCUGGCgcuguuggucaugcuGGCCc -3' miRNA: 3'- -CCGGCugGaCGGCGCc----UGGCCG---------------CCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 80625 | 0.66 | 0.590379 |
Target: 5'- uGCCGGCCgaGCaccuCGC-GACCGGCGaCCc -3' miRNA: 3'- cCGGCUGGa-CG----GCGcCUGGCCGCcGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 86959 | 0.66 | 0.596878 |
Target: 5'- cGUCGACgUccGCUGCGGcgagcugcgacgagGuCCGGCGGCUu -3' miRNA: 3'- cCGGCUGgA--CGGCGCC--------------U-GGCCGCCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 58928 | 0.66 | 0.599667 |
Target: 5'- uGCCGcGCCUGCaCGCcauGGACgaGGaCGaGCCg -3' miRNA: 3'- cCGGC-UGGACG-GCG---CCUGg-CC-GC-CGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 104797 | 0.66 | 0.599667 |
Target: 5'- aGGCgGugCUGCuuCGCGauGGCCaGGuCGGUCa -3' miRNA: 3'- -CCGgCugGACG--GCGC--CUGG-CC-GCCGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 180744 | 0.66 | 0.599667 |
Target: 5'- cGCCGuCCgGCUccucgGCGGcuUCGGCGGCa -3' miRNA: 3'- cCGGCuGGaCGG-----CGCCu-GGCCGCCGg -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 144831 | 0.66 | 0.599667 |
Target: 5'- cGCgGACgaGCCGCuGGAgCGG-GuGCCg -3' miRNA: 3'- cCGgCUGgaCGGCG-CCUgGCCgC-CGG- -5' |
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10734 | 5' | -65.5 | NC_002794.1 | + | 138163 | 0.66 | 0.599667 |
Target: 5'- aGCCGGCauuUGaCGCucuuGACCucGGCGGCCa -3' miRNA: 3'- cCGGCUGg--ACgGCGc---CUGG--CCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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