miRNA display CGI


Results 81 - 100 of 469 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10734 5' -65.5 NC_002794.1 + 69122 0.66 0.581115
Target:  5'- cGGCau-CUcGCCGCcGACCGcCGGCCa -3'
miRNA:   3'- -CCGgcuGGaCGGCGcCUGGCcGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 115600 0.66 0.581115
Target:  5'- cGGUCGACCcGCuCGCccGGcGCCGGgaGGCg -3'
miRNA:   3'- -CCGGCUGGaCG-GCG--CC-UGGCCg-CCGg -5'
10734 5' -65.5 NC_002794.1 + 37490 0.66 0.581115
Target:  5'- cGGCgCGACCaGCCGCacGCgCGuGUGGUCg -3'
miRNA:   3'- -CCG-GCUGGaCGGCGccUG-GC-CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 34345 0.66 0.581115
Target:  5'- cGGCCGcGCCguuCCGCccgcucuaccuGGACgacaacacggCGGUGGCCa -3'
miRNA:   3'- -CCGGC-UGGac-GGCG-----------CCUG----------GCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 42468 0.66 0.581115
Target:  5'- cGUCGuCCaUGUCGCGcGcGCCGG-GGCCg -3'
miRNA:   3'- cCGGCuGG-ACGGCGC-C-UGGCCgCCGG- -5'
10734 5' -65.5 NC_002794.1 + 16923 0.66 0.581115
Target:  5'- cGCCGA-CUGUCGuCGGcGCCGaGCcGCCa -3'
miRNA:   3'- cCGGCUgGACGGC-GCC-UGGC-CGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 149335 0.66 0.581115
Target:  5'- cGGaCCGaACCgGCCGgGGuCgCGGgGGCg -3'
miRNA:   3'- -CC-GGC-UGGaCGGCgCCuG-GCCgCCGg -5'
10734 5' -65.5 NC_002794.1 + 193986 0.66 0.581115
Target:  5'- cGGCCGcuACC-GCCGCccccGGcuucGCCuucGCGGCCg -3'
miRNA:   3'- -CCGGC--UGGaCGGCG----CC----UGGc--CGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 80051 0.66 0.581115
Target:  5'- uGCCGGCgCgaGCCGCGGuACUuGGCccGCCa -3'
miRNA:   3'- cCGGCUG-Ga-CGGCGCC-UGG-CCGc-CGG- -5'
10734 5' -65.5 NC_002794.1 + 86378 0.66 0.584817
Target:  5'- gGGCCGAgccgggacggaugcuCCggGCCGCGcccGACCGGauguucCGGaCCg -3'
miRNA:   3'- -CCGGCU---------------GGa-CGGCGC---CUGGCC------GCC-GG- -5'
10734 5' -65.5 NC_002794.1 + 180004 0.66 0.590379
Target:  5'- cGGCgGGCCcgGCCaCGacgacGGCC-GCGGCCg -3'
miRNA:   3'- -CCGgCUGGa-CGGcGC-----CUGGcCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 50625 0.66 0.590379
Target:  5'- aGCUG-CUUGCC-CGu-CCGGCGGUCg -3'
miRNA:   3'- cCGGCuGGACGGcGCcuGGCCGCCGG- -5'
10734 5' -65.5 NC_002794.1 + 62401 0.66 0.590379
Target:  5'- -aCUGACC-GCCuCGGACCuGCGGUg -3'
miRNA:   3'- ccGGCUGGaCGGcGCCUGGcCGCCGg -5'
10734 5' -65.5 NC_002794.1 + 125325 0.66 0.590379
Target:  5'- cGCCGAgCCggagcgcGCCaCGGcgcACCGGCaGCCg -3'
miRNA:   3'- cCGGCU-GGa------CGGcGCC---UGGCCGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 139900 0.66 0.590379
Target:  5'- uGCgGGCCaGCCGCaGGCCgucGGaCGGCa -3'
miRNA:   3'- cCGgCUGGaCGGCGcCUGG---CC-GCCGg -5'
10734 5' -65.5 NC_002794.1 + 85429 0.66 0.58667
Target:  5'- cGcCCGACCcaagagcuucuggGCCGCGacaacaacauGGCCGGCgcccGGCCu -3'
miRNA:   3'- cC-GGCUGGa------------CGGCGC----------CUGGCCG----CCGG- -5'
10734 5' -65.5 NC_002794.1 + 52841 0.66 0.587597
Target:  5'- aGGCCGgucagcacguucGCCacgGCCGCGGccuuCCGGUacacccgaugguggGGUCg -3'
miRNA:   3'- -CCGGC------------UGGa--CGGCGCCu---GGCCG--------------CCGG- -5'
10734 5' -65.5 NC_002794.1 + 40575 0.66 0.584817
Target:  5'- cGCCGuCCUgGCCGCGGGCCcucuccuccgagucGUcGCCg -3'
miRNA:   3'- cCGGCuGGA-CGGCGCCUGGc-------------CGcCGG- -5'
10734 5' -65.5 NC_002794.1 + 86186 0.66 0.584817
Target:  5'- gGGCCGAgccgggacggaugcuCCggGCCGCGcccGACCGGauguucCGGaCCg -3'
miRNA:   3'- -CCGGCU---------------GGa-CGGCGC---CUGGCC------GCC-GG- -5'
10734 5' -65.5 NC_002794.1 + 86546 0.66 0.584817
Target:  5'- gGGCCGAgccgggacggaugcuCCggGCCGCGcccGACCGGauuuucCGGaCCg -3'
miRNA:   3'- -CCGGCU---------------GGa-CGGCGC---CUGGCC------GCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.