miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 22158 0.66 0.899957
Target:  5'- aACGUCGAgugagcacCGGCGcuccaCG-GACGGCCg -3'
miRNA:   3'- -UGCAGCU--------GCCGCcaa--GCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 142202 0.66 0.899957
Target:  5'- uGCGggaagCGGCGGCGGca-GcGGCGGUgCg -3'
miRNA:   3'- -UGCa----GCUGCCGCCaagCuCUGCCGgG- -5'
10735 3' -58.7 NC_002794.1 + 22905 0.66 0.893781
Target:  5'- -gGUgGACGGCGG--CGAccGCGGCCg -3'
miRNA:   3'- ugCAgCUGCCGCCaaGCUc-UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 54990 0.66 0.893781
Target:  5'- cGCGgCGACGGCGGcgacUCGccGGGC-GUCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCa---AGC--UCUGcCGGG- -5'
10735 3' -58.7 NC_002794.1 + 140187 0.66 0.893781
Target:  5'- uCGgCGACGGCGucgUCGAGggGCGaCCCg -3'
miRNA:   3'- uGCaGCUGCCGCca-AGCUC--UGCcGGG- -5'
10735 3' -58.7 NC_002794.1 + 121306 0.66 0.893781
Target:  5'- aACGUgcaGAuCGGCGGUuggcccUCGAGGC-GCCg -3'
miRNA:   3'- -UGCAg--CU-GCCGCCA------AGCUCUGcCGGg -5'
10735 3' -58.7 NC_002794.1 + 110267 0.66 0.893781
Target:  5'- gGCGUcgCGACGGCGGccgcCGuccucgGGCCCg -3'
miRNA:   3'- -UGCA--GCUGCCGCCaa--GCucug--CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 142314 0.66 0.893781
Target:  5'- gGCGgaGGCGGCGGcgC-AGGCGGCg- -3'
miRNA:   3'- -UGCagCUGCCGCCaaGcUCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 126395 0.66 0.887401
Target:  5'- uGCG-CGGCGGCGug-CGcGGCGGUCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaaGCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 44496 0.66 0.887401
Target:  5'- gACGUUGucucACGGCGGccc-AGACcgGGCCCg -3'
miRNA:   3'- -UGCAGC----UGCCGCCaagcUCUG--CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 262 0.66 0.887401
Target:  5'- cCGcCGcGCGcGCGGacgCGAGgacgGCGGCCCu -3'
miRNA:   3'- uGCaGC-UGC-CGCCaa-GCUC----UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 131564 0.66 0.887401
Target:  5'- -gGUCGgcGCGGCGcccgUCuuGACGGCCUc -3'
miRNA:   3'- ugCAGC--UGCCGCca--AGcuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 152632 0.66 0.887401
Target:  5'- uCGUCcugGGCGGC-GUUCGAG-CGGCg- -3'
miRNA:   3'- uGCAG---CUGCCGcCAAGCUCuGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 151954 0.66 0.887401
Target:  5'- cGCGaCGACGGCcc--CGGGugcuccuCGGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGccaaGCUCu------GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 124399 0.66 0.887401
Target:  5'- cGCGUCGcCGGUcg-UCGGGGCGccGUCCg -3'
miRNA:   3'- -UGCAGCuGCCGccaAGCUCUGC--CGGG- -5'
10735 3' -58.7 NC_002794.1 + 80006 0.66 0.880817
Target:  5'- gACGagGACGGCGa--CGAGGaGGCCg -3'
miRNA:   3'- -UGCagCUGCCGCcaaGCUCUgCCGGg -5'
10735 3' -58.7 NC_002794.1 + 142236 0.66 0.880817
Target:  5'- aGCGgcggaGGCGGCGGU--GAGACGGaCg -3'
miRNA:   3'- -UGCag---CUGCCGCCAagCUCUGCCgGg -5'
10735 3' -58.7 NC_002794.1 + 53218 0.66 0.880817
Target:  5'- uCGUCGAgCGGCgaaacGGUcCGuccuCGGCCCg -3'
miRNA:   3'- uGCAGCU-GCCG-----CCAaGCucu-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 75783 0.66 0.880817
Target:  5'- cUGUCGAUGGCGGaacaccggCGAcaacCGGCCg -3'
miRNA:   3'- uGCAGCUGCCGCCaa------GCUcu--GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 107589 0.66 0.880817
Target:  5'- gGCGgagaaGACGGCGGgg-GAGACGGg-- -3'
miRNA:   3'- -UGCag---CUGCCGCCaagCUCUGCCggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.