Results 21 - 40 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10735 | 3' | -58.7 | NC_002794.1 | + | 142202 | 0.66 | 0.899957 |
Target: 5'- uGCGggaagCGGCGGCGGca-GcGGCGGUgCg -3' miRNA: 3'- -UGCa----GCUGCCGCCaagCuCUGCCGgG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 110267 | 0.66 | 0.893781 |
Target: 5'- gGCGUcgCGACGGCGGccgcCGuccucgGGCCCg -3' miRNA: 3'- -UGCA--GCUGCCGCCaa--GCucug--CCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 121306 | 0.66 | 0.893781 |
Target: 5'- aACGUgcaGAuCGGCGGUuggcccUCGAGGC-GCCg -3' miRNA: 3'- -UGCAg--CU-GCCGCCA------AGCUCUGcCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 140187 | 0.66 | 0.893781 |
Target: 5'- uCGgCGACGGCGucgUCGAGggGCGaCCCg -3' miRNA: 3'- uGCaGCUGCCGCca-AGCUC--UGCcGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 54990 | 0.66 | 0.893781 |
Target: 5'- cGCGgCGACGGCGGcgacUCGccGGGC-GUCCg -3' miRNA: 3'- -UGCaGCUGCCGCCa---AGC--UCUGcCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 22905 | 0.66 | 0.893781 |
Target: 5'- -gGUgGACGGCGG--CGAccGCGGCCg -3' miRNA: 3'- ugCAgCUGCCGCCaaGCUc-UGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 124399 | 0.66 | 0.887401 |
Target: 5'- cGCGUCGcCGGUcg-UCGGGGCGccGUCCg -3' miRNA: 3'- -UGCAGCuGCCGccaAGCUCUGC--CGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 189957 | 0.66 | 0.880817 |
Target: 5'- gACGgacCGACGGaCGGgccgcccgcUCGcccGACGGUCCg -3' miRNA: 3'- -UGCa--GCUGCC-GCCa--------AGCu--CUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 126395 | 0.66 | 0.887401 |
Target: 5'- uGCG-CGGCGGCGug-CGcGGCGGUCg -3' miRNA: 3'- -UGCaGCUGCCGCcaaGCuCUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 44496 | 0.66 | 0.887401 |
Target: 5'- gACGUUGucucACGGCGGccc-AGACcgGGCCCg -3' miRNA: 3'- -UGCAGC----UGCCGCCaagcUCUG--CCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 262 | 0.66 | 0.887401 |
Target: 5'- cCGcCGcGCGcGCGGacgCGAGgacgGCGGCCCu -3' miRNA: 3'- uGCaGC-UGC-CGCCaa-GCUC----UGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 131564 | 0.66 | 0.887401 |
Target: 5'- -gGUCGgcGCGGCGcccgUCuuGACGGCCUc -3' miRNA: 3'- ugCAGC--UGCCGCca--AGcuCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 152632 | 0.66 | 0.887401 |
Target: 5'- uCGUCcugGGCGGC-GUUCGAG-CGGCg- -3' miRNA: 3'- uGCAG---CUGCCGcCAAGCUCuGCCGgg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 151954 | 0.66 | 0.887401 |
Target: 5'- cGCGaCGACGGCcc--CGGGugcuccuCGGCCCg -3' miRNA: 3'- -UGCaGCUGCCGccaaGCUCu------GCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 17251 | 0.67 | 0.859894 |
Target: 5'- --uUCGACGGCGG--CGAccCGGCUCg -3' miRNA: 3'- ugcAGCUGCCGCCaaGCUcuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 114824 | 0.67 | 0.852544 |
Target: 5'- cGCGcUCucCGGCGGc-CGAGuCGGCUCg -3' miRNA: 3'- -UGC-AGcuGCCGCCaaGCUCuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 70854 | 0.67 | 0.859894 |
Target: 5'- gACGUgccggccuccucCGGCGGCGGca-GcGGCGGCUCc -3' miRNA: 3'- -UGCA------------GCUGCCGCCaagCuCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 106966 | 0.67 | 0.859894 |
Target: 5'- cGCGUCGccucgcGCGGCGGccggcacggCGGuGGCGGCgCu -3' miRNA: 3'- -UGCAGC------UGCCGCCaa-------GCU-CUGCCGgG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 67956 | 0.67 | 0.859894 |
Target: 5'- cCGagGACGGCGGgcCcAGACGGgUCg -3' miRNA: 3'- uGCagCUGCCGCCaaGcUCUGCCgGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 598 | 0.67 | 0.859894 |
Target: 5'- cCGuUCGugGcCGGgugCGgucAGGCGGCCCg -3' miRNA: 3'- uGC-AGCugCcGCCaa-GC---UCUGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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