miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 32872 0.68 0.787805
Target:  5'- gGCGggCGGCGGCGG--CGGcGGCGGCa- -3'
miRNA:   3'- -UGCa-GCUGCCGCCaaGCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 82136 0.68 0.796413
Target:  5'- gGCGUcaCGugGGCGGacaccCGGcccGACGGCuCCg -3'
miRNA:   3'- -UGCA--GCugCCGCCaa---GCU---CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 98465 0.68 0.796413
Target:  5'- aGCGUCGACGGgaCGGaa-GAGcAgGGCCa -3'
miRNA:   3'- -UGCAGCUGCC--GCCaagCUC-UgCCGGg -5'
10735 3' -58.7 NC_002794.1 + 101588 0.68 0.813221
Target:  5'- cCG-CGGcCGGgGGggCGGGugcCGGCCCg -3'
miRNA:   3'- uGCaGCU-GCCgCCaaGCUCu--GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 121518 0.68 0.813221
Target:  5'- gACGUcCGAacCGGCGGUcgUCucGACGgaGCCCg -3'
miRNA:   3'- -UGCA-GCU--GCCGCCA--AGcuCUGC--CGGG- -5'
10735 3' -58.7 NC_002794.1 + 49856 0.68 0.813221
Target:  5'- cGCGUCGGCGGCGcc-CGccacccGGACGuggagcGCCCg -3'
miRNA:   3'- -UGCAGCUGCCGCcaaGC------UCUGC------CGGG- -5'
10735 3' -58.7 NC_002794.1 + 83879 0.68 0.804887
Target:  5'- gGCG-CGACGGCcccgGGcUCGGcgcccGACGaGCCCg -3'
miRNA:   3'- -UGCaGCUGCCG----CCaAGCU-----CUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 149679 0.68 0.812394
Target:  5'- cGCGUCGcgcucgacuggccGCGGgGGccgccuggCGGGugGGCCg -3'
miRNA:   3'- -UGCAGC-------------UGCCgCCaa------GCUCugCCGGg -5'
10735 3' -58.7 NC_002794.1 + 138704 0.68 0.804887
Target:  5'- aAUGagGGCGGCGuGgacucgcgUCGAGcCGGCUCg -3'
miRNA:   3'- -UGCagCUGCCGC-Ca-------AGCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 44328 0.68 0.804887
Target:  5'- aGCG-CGGCGGCGaa--GaAGACGGCgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaagC-UCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 129168 0.68 0.796413
Target:  5'- cGCGgcCGAUGGCcGUUCGAu-CGGCCUc -3'
miRNA:   3'- -UGCa-GCUGCCGcCAAGCUcuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 129130 0.68 0.796413
Target:  5'- cCGUCuggaACGGCGcgUCGAGacugugucGCGGCCCu -3'
miRNA:   3'- uGCAGc---UGCCGCcaAGCUC--------UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 118245 0.68 0.796413
Target:  5'- gAUGUCGGCGGgcuggaGGUcggcCGGGGCGGCg- -3'
miRNA:   3'- -UGCAGCUGCCg-----CCAa---GCUCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 147047 0.68 0.796413
Target:  5'- cCGUCGGCGGcCGGUcuaaGGACGGagCCg -3'
miRNA:   3'- uGCAGCUGCC-GCCAagc-UCUGCCg-GG- -5'
10735 3' -58.7 NC_002794.1 + 130622 0.68 0.796413
Target:  5'- -gGUUGACGGU-GUUCGGcgucGcCGGCCCg -3'
miRNA:   3'- ugCAGCUGCCGcCAAGCU----CuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 184579 0.68 0.796413
Target:  5'- cGCGgCGGCGGCGGccaCGc-GCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa-GCucUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 49600 0.69 0.761258
Target:  5'- cGCGaucggCGACGGCGGgcgccGGCGGCgCCu -3'
miRNA:   3'- -UGCa----GCUGCCGCCaagcuCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 65174 0.69 0.761258
Target:  5'- gGCGcCGAgacCGGCGGgugccggCGAGGuCGGaCCCu -3'
miRNA:   3'- -UGCaGCU---GCCGCCaa-----GCUCU-GCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 141752 0.69 0.760356
Target:  5'- gACGUacuugGACGaGCGGUUCGAuuccgacGACGaGCCg -3'
miRNA:   3'- -UGCAg----CUGC-CGCCAAGCU-------CUGC-CGGg -5'
10735 3' -58.7 NC_002794.1 + 3755 0.69 0.761258
Target:  5'- cGCGUC-ACGGCGGggCGGGggagugacucaGCGggaGCCCu -3'
miRNA:   3'- -UGCAGcUGCCGCCaaGCUC-----------UGC---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.