miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 147127 1.1 0.002363
Target:  5'- gACGUCGACGGCGGUUCGAGACGGCCCc -3'
miRNA:   3'- -UGCAGCUGCCGCCAAGCUCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 58061 0.82 0.17566
Target:  5'- gGCGgccccggCGGCGGCGGgaCG-GGCGGCCCg -3'
miRNA:   3'- -UGCa------GCUGCCGCCaaGCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 65939 0.8 0.232834
Target:  5'- gGCGUCGGCGGCGGUaucgucgCGAGcgGCGGCg- -3'
miRNA:   3'- -UGCAGCUGCCGCCAa------GCUC--UGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 14555 0.79 0.260954
Target:  5'- cCGUCGACGcGCGGgaggCGAGcCGGCCg -3'
miRNA:   3'- uGCAGCUGC-CGCCaa--GCUCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 65987 0.78 0.272955
Target:  5'- aACGUCGAacugGGCGGUgaucccggcacCGAGGCGGCCg -3'
miRNA:   3'- -UGCAGCUg---CCGCCAa----------GCUCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 91219 0.76 0.361774
Target:  5'- gACG-CGACGGCGGacggCGcGGCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa--GCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 186336 0.76 0.354274
Target:  5'- cACGaUCGACGGCGG--CGGcGACGuGCCCg -3'
miRNA:   3'- -UGC-AGCUGCCGCCaaGCU-CUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 121363 0.76 0.354274
Target:  5'- uCGUCGACGGCGuc-CGAGcCGGCCg -3'
miRNA:   3'- uGCAGCUGCCGCcaaGCUCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 34080 0.75 0.425638
Target:  5'- cCGcCGGCGGcCGGgcagccgUCG-GGCGGCCCg -3'
miRNA:   3'- uGCaGCUGCC-GCCa------AGCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 55308 0.75 0.400903
Target:  5'- gGCGUCG-CGGCGGgcgCG-GGCGGCUUc -3'
miRNA:   3'- -UGCAGCuGCCGCCaa-GCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 44461 0.75 0.425638
Target:  5'- gACGUCGGCGGCGG----AGACcGCCCc -3'
miRNA:   3'- -UGCAGCUGCCGCCaagcUCUGcCGGG- -5'
10735 3' -58.7 NC_002794.1 + 114719 0.74 0.468801
Target:  5'- gGCGgCGGCGGCGGcuccggguucgUCGAGcCGGCgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCa----------AGCUCuGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 90937 0.74 0.468801
Target:  5'- gGCGaCGugGGCGGgcugugcgcCGAGGCccgGGCCCg -3'
miRNA:   3'- -UGCaGCugCCGCCaa-------GCUCUG---CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 140110 0.74 0.442624
Target:  5'- gGCGaUCGACGGCGG-UCGAcgGugGGCg- -3'
miRNA:   3'- -UGC-AGCUGCCGCCaAGCU--CugCCGgg -5'
10735 3' -58.7 NC_002794.1 + 50772 0.74 0.477702
Target:  5'- gGCGgCGACGGCGcGUcUCG-GGCGGCgCCu -3'
miRNA:   3'- -UGCaGCUGCCGC-CA-AGCuCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 14466 0.73 0.541177
Target:  5'- gUGUCGAgCGGCGcgccgcgcucgcuGUUCGcggcGGCGGCCCg -3'
miRNA:   3'- uGCAGCU-GCCGC-------------CAAGCu---CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 112320 0.73 0.514098
Target:  5'- gGCGcCGACGGCGGggagCGcGcCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa--GCuCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 107502 0.73 0.504888
Target:  5'- uUGUUGACGGgGGUgccggUCGAcgccGACGGCCg -3'
miRNA:   3'- uGCAGCUGCCgCCA-----AGCU----CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 94006 0.73 0.495749
Target:  5'- gGCGcCGGCGGCGGgccggCGGGuuccgccgGCGGgCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa---GCUC--------UGCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 82049 0.73 0.532718
Target:  5'- gGCGgCGGCGGCGGcgUCGuccuCGGCCUc -3'
miRNA:   3'- -UGCaGCUGCCGCCa-AGCucu-GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.